{"database":"EVA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Vcf":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB62681/230905_finalheader_210922_10277_samples_all_snps_study_samples.accessioned.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB62681/230905_finalheader_210922_10277_samples_all_snps_study_samples.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB62681/230905_finalheader_210922_10277_samples_all_snps_study_samples.accessioned.vcf.gz.csi"],"Other":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB62681/230905_finalheader_210922_10277_samples_all_snps_study_samples.vcf.csi"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"dataset_type":["Genotyping By Sequencing"],"omics_type":["Genomics"],"submitter":["IPK Gatersleben - Leibniz Institute of Plant Genetics and Crop Plant Research"],"instrument_platform":["Illumina NovaSeq 6000"],"species":["Capsicum"],"full_dataset_link":["https://www.ebi.ac.uk/eva/?eva-study=PRJEB62681"],"repository":["EVA"],"name_synonyms":["Hot Peppers, Bell Pepper, cg11478, Red Peppers, Pepper, signal peptide peptidase, Jalapeno Pepper, Chili Pepper, Chile Pepper, PSL3, SPPL1, IMPAS-1, Spp, SPP, Paprika, CG30327, Cayenne Pepper, Sweet, Pimiento, Chile, CG11478, IMP1, Jalapeno, Hot, CG6393, T18E12.21, Cayenne Peppers, spp, Sweet Peppers, ATSPP, Bell, Chile Peppers, Dmel_CG6393, DmelCG42257, DmelCG6525, Bell Peppers, T18E12_21, F20B18.110, Chilli Peppers, F20B18_110, Jalapeno Peppers, Chilli Pepper, PEPPER, Capsicum annuum, Chilli, Peppers, Red Pepper, FBgn0082831, Chili, peppers, PSENL3, Sweet Pepper, Green Peppers, MSTP086, H13, 65K, signal peptide peptidase activity., CG42257, Dmel_CG30327, Red, CG6525, dJ324O17.1, Chili Peppers, snp, IMPAS, Green Pepper, Cayenne, Green, Hot Pepper"],"description_synonyms":["TROY., TRADE, Hot Peppers, Bell Pepper, Red Peppers, Pepper, human being, Nucleotide Polymorphism, conformation, Jalapeno Pepper, Capsicum conoides, supply, Chili Pepper, Chile Pepper, Modern, TAJ-alpha, Paprika, Nucleotide Polymorphisms, SNPs, Cayenne Pepper, Sweet, Pimiento, Chile, Human, School-Age, Jalapeno, Single Nucleotide Polymorphisms, Homo sapiens, Toxicity and JNK inducer, School Age, Hot, Cayenne Peppers, Sweet Peppers, supply and distribution, Man, Bell, Capsicum annuum L., Chile Peppers, School-Age Populations, Populations, Bell Peppers, Man (Taxonomy), Chilli Peppers, distribution, Single Nucleotide, Jalapeno Peppers, Chilli Pepper, Population, Capsicum annuum, Chilli, Peppers, Red Pepper, School Age Populations, human, Chili, Capsicum conoide, Single Nucleotide Polymorphism, peppers, Sweet Pepper, Green Peppers, Capsicum annuum var. conoide, Polymorphisms, Modern Man, Red, Capsicum annuum var. conoides, Chili Peppers, Single, School-Age Population, School Age Population, Capsicum capsicum, Green Pepper, Cayenne, TAJ, Green, Hot Pepper"],"additional_accession":[]},"is_claimable":false,"name":"SNP matrix of 8,953 pepper (Capsicum spp.) accessions from worldwide genebanks","description":"By combining single nucleotide polymorphisms (SNPs) based data and passport information, we investigated the genomic diversity and population structure of wild and domesticated peppers, tracing back to routes of evolution and providing a model of Capsicum annuum distribution, which reflects human trade and historical/cultural influences.","dates":{"publication":"2023-06-01"},"accession":"PRJEB62681","cross_references":{"TAXONOMY":["4071"]}}