{"database":"EVA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Vcf":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70515/KAT6A_polymorphims_risk_cryptorchidism_in_dogs.accessioned.vcf.gz.csi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70515/KAT6A_polymorphims_risk_cryptorchidism_in_dogs.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70515/KAT6A_polymorphims_risk_cryptorchidism_in_dogs.accessioned.vcf.gz"],"Other":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70515/KAT6A_polymorphims_risk_cryptorchidism_in_dogs.vcf.csi"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"dataset_type":["Genotyping By Sequencing"],"omics_type":["Genomics"],"submitter":["Poznan University of Life Sciences, Faculty of Veterinary Medicine and Animal Science, Department of Genetics and Animal Breeding, Poznan, Poland"],"instrument_platform":["-"],"species":["Canis Lupus Familiaris"],"full_dataset_link":["https://www.ebi.ac.uk/eva/?eva-study=PRJEB70515"],"repository":["EVA"],"name_synonyms":["genetic, CRYPTO, Testis, Undescended Testis, cryptorchidism, Cryptorchism, Cryptorchidism, Bilateral, Inguinal, Abdominal, familial, Inguinal Cryptorchidism, Bilateral Cryptorchidism, inherited genetic, Unilateral Cryptorchidism, Unilateral Or Bilateral, Unilateral, Abdominal Cryptorchidism, constitutitional genetic, hereditary, Undescended Testes., Testes, unilateral or bilateral, Undescended"],"description_synonyms":["atypia, degs, Materials, DNS, HSN1E, determination, (Deoxyribonucleotide)n, Canis familiaris, Inguinal, Neoplasms, CARD, Benign Neoplasm, connatal, Gene, FADS7, Coding, Tumor, Malignant, Normalcies, Dog, Deoxyribonucleic acids, Undescended, Subfertility, Aim, AIM, Deoxyribonucleic Acid, Canis canis, Gene Products, DEGS, Bilateral Cryptorchidism, atypical, Infertility, increase in risk, Medical, dog, male, Testis, Normalities, average, differences of sex development, DNMT1, thymus nucleic acid, Sex, Genotypic Sex, Genetic, Clinical, Bilateral, Malignancy, DNMT1_HUMAN, occurrence, Medical Coding, prevalence, Double Stranded, proteins, Deoxyribonucleic acid, Abdominal Cryptorchidism, disorders of sex development, disorder of sexual differentiation, Sub-Fertility, Phenotypic, Des1, DES1, Neoplasias, API6, Des1., Undescended Testis, DEGS-1, sex, Cryptorchidism, infertility, Reproductive Sterility, Degs, disorder of sex development, Canis lupus borealis, Malignancies, Double-Stranded DNA, (Deoxyribonucleotide)m, deoxyribonucleic acids, DNAn, disorder of sex differentiation, CXXC finger protein 9, Methylations, incidence, Cancer, Tumors, DNA MTase HsaI, DNA (cytosine-5)-methyltransferase 1, Mdes, Reproductive, Individual Health, MLD, cryptorchidism, inborn, Malignant Neoplasm, aberrant, Males, DNAn+1, frequency, Proteins, DNMT, DSD, Unilateral Cryptorchidism, Unilateral Or Bilateral, defective, dogs, Normalcy, Double-Stranded, MCMT, Cistrons, (Deoxyribonucleotide)n+m, sex differentiation disease, MT, Benign, DNA methyltransferase HsaI, chemical analysis, Protein, Neoplasm, sequence, Genetic Materials, Inguinal Cryptorchidism, Individual, methylation, ds-DNA, Unilateral, desoxyribose nucleic acid, outbreaks, Genetic Material, CRYPTO, CXXC9, AA536663, Genotypic, ADCADN, sex differentiation disorder, UNQ203/PRO229, CT-2, maleate, Normality, DNA (cytosine-5-)-methyltransferase 1, common, Benign Neoplasms, disorders of sex development (DSD), conditions affecting reproductive development, Cancers, surveillance, CXXC-type zinc finger protein 9, morbidity, endemics, primary structure of sequence macromolecule, Malignant Neoplasms, male human body, Protein Gene Products, Gene Proteins, Canis domesticus, sexual differentiation disorder, Health, Cryptorchism, Breedings, Material, Phenotypic Sex, Abdominal, Sterility, ds DNA, intersex conditions, Canis borealis, Desoxyribonukleinsaeure, Cistron, epidemics, intersex, assay, DNA, Undescended Testes, Des-1, Testes, unilateral or bilateral, Neoplasia, CLEC2C, m.HsaI"],"additional_accession":[]},"is_claimable":false,"name":"Identification of genetic and epigenetic markers associated with canine cryptorchidism","description":"Disorders of sex development (DSD) are congenital conditions in which the chromosomal, gonadal or phentypical sex is atypical and one of them is common in male dogs  - cryptorchidism. This abnormality is responsible for sterility or infertility, as well as increased risk of malignancy and thus is considered as important breeding and health issues. The aim of this project is comparative analysis of: (1) expression of genes encoding proteins or non-coding RNAs in the descended and undescended testes of unilateral cryptorchid dogs, (2) methylation status of differentially expressed genes (DEGs) in descended and undescended testes and (3) frequency of DNA variants in coding sequence of the DEGs.","dates":{"publication":"2023-11-27"},"accession":"PRJEB70515","cross_references":{"TAXONOMY":["9615"]}}