EVAapplication/xmlftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70778/2023-11-15_BPGv2_norm.vcf.gzftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70778/2023-11-15_BPGv2_norm.accessioned.vcf.contigsftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70778/2023-11-15_BPGv2_norm.accessioned.vcf.variantsftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB70778/2023-11-15_BPGv2_norm.vcf.csiprimaryOK200Whole Genome SequencingGenomicsLeibniz Institute of Plant Genetics and Crop Plant Research-Hordeum Vulgarehttps://www.ebi.ac.uk/eva/?eva-study=PRJEB70778EVAphapii, cg11478, IPP2A2, RNA, Databank, RNA Sequence, igaad, StF-IT-1, DNA Data, RNA Sequence Databases, Database, CG30327, RNA Database, DNA Databank, PHAPII, RNA Databases, group, 5730420M11Rik, CG11478, Nucleic Acid Sequence Databases, European Molecular Biology Laboratory Nucleotide Sequence Database, two-rowed barley, Sequence Database, Nucleic Acid Sequence, I-2PP2A, Nucleic Acid, DNA Data Banks, CG6393, Dm I-2, I2PP2A, Nucleic Acid Databases, core, DNA Database, DNA Sequence, EMBL Nucleotide Sequence Database, RNA Sequence Database, domesticated barley, Dmel_CG6393, DmelCG42257, SET, Bank, Databanks, HLA-DR-associated protein II, Data Bank, ensemble, DI-2, TAF-I, I-2Dm, ipp2a2, DNA Sequence Databases, Databases, 2pp2a, CG4299, DNA Databases, DDBJ, Banks, DNA Sequence Database, DNA Databanks, CG10574, Data Banks, DmelCG4299, I-2PP1, Barley, DNA Data Bank, IGAAD, set, dSET/TAF-Ibeta, Hordeum vulgare, 2610030F17Rik, TAF-IBETA, 2PP2A, DmelCG10574, barley, taf-ibeta, 65K, GenBank, CG42257, Dmel_CG30327, dSET, dSet, snp, TAF-Ibeta, Hordeum vulgare L., DNA, Sequence Databases, Nucleic Acid Database., DNA Data Bank of Japan, AA407739, i2pp2a, Horedum vulgarehLuc7A, phapii, screening, IPP2A2, Habitats, findings, determination, Ecologic System, CROP, land plants, OA48-18, Crop, familial, igaad, LUC7A, StF-IT-1, white, Niche, PHAPII, group, 5730420M11Rik, Caucasian, Genogroup, I-2PP2A, European, chemical analysis, Dm I-2, Systems, I2PP2A, symptoms, Ecologic., core, CRA, Ecological, region, Caucasoid, RGD1307981, Caucasians, SET, Ecologic, Ecosystems, barleys, Occidental, HLA-DR-associated protein II, Genomes, ensemble, DI-2, craw, TAF-I, I-2Dm, System, CREAP-1, ipp2a2, Plant, signs, Biome, 2pp2a, plants, whole genome, CG4299, Ecological Systems, Habitat, CG10574, Genotypes, genetic, DmelCG4299, I-2PP1, IGAAD, set, dSET/TAF-Ibeta, Genogroups, higher plants, 2610030F17Rik, TAF-IBETA, 2PP2A, Biomes, DmelCG10574, taf-ibeta, Whites, Ecological System, dSET, dSet, site, White, inherited genetic, TAF-Ibeta, species, assay, constitutitional genetic, AA407739, hereditary, i2pp2a, Ecological Niche, Ecologic SystemsfalseSNP matrix of barley core set from german ex-situ genbank IPK selected for BPGv2 project.Pangenomes are collections of annotated genome sequences of multiple individuals of a species. The structural variants uncovered by these datasets are a boon to genetic analysis in crop plants. The analysis comprises a core set of 1,000 genotypes selected from a universe of 22,626 barleys of the german ex-site genebank IPK and a total of 315 elite cultivars of European ancestry. Our findings support the notion that rapid evolution at structurally complex loci may have helped crop plants adapt to new selective regimes in agricultural ecosystems.2024-09-09PRJEB707784513