<HashMap><database>EVA</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Vcf>ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB87694/sheep50.accessioned.vcf.gz</Vcf><Vcf>ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB87694/sheep50.accessioned.vcf.gz.csi</Vcf><Vcf>ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB87694/sheep50.vcf.gz</Vcf><Other>ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB87694/sheep50.vcf.csi</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><dataset_type>Whole Genome Sequencing</dataset_type><omics_type>Genomics</omics_type><submitter>Key Laboratory of Livestock Biology</submitter><instrument_platform>Illumina HiSeq 2000</instrument_platform><species>Ovis Aries</species><full_dataset_link>https://www.ebi.ac.uk/eva/?eva-study=PRJEB87694</full_dataset_link><repository>EVA</repository><name_synonyms>Domestic Sheep, study, wild sheep, Genomes, Black, Ovis aries musimon, domestic sheep, Ovis gmelini musimon, Afro American, Mouflon, Ovis, Dall Sheep, sheep., whole genome, Ovis dalli, BLACK OR AFRICAN AMERICAN, sheep, Mouflons, Ovis ammon aries, Afro-American, Ovis orientalis aries, Ovis ovis, Ovis aries, lambs, Sheep, Dall, Black Populations</name_synonyms><description_synonyms>other disease, Policies, Ghrfr, Bru, DNS, Raw, determination, Repeat, (Deoxyribonucleotide)n, Health Resource, Black, Health Care Benchmarking, domestic sheep, Direct, Afro American, BBS, Utility, Selfish Genes, Gene, Progress Reports, Healthcare Benchmarking, Repetitive Sequence, Selfish DNAs, Deoxyribonucleic acids, element, Easterlin, Repetitive Sequences, Ovis orientalis aries, Investigative, diseases, Deoxyribonucleic Acid, DNA Repetitious Region, Ovis ovis, Summary Report, Core Genome, disease or disorder, diseases and disorders, Selfish Gene, Del(8)44H, Analysis, Microeconomic, Summary Reports, Resources, Svc, study, Selfish DNA, human disease, Theory, thymus nucleic acid, Utility Theories, Diversity, Genetic, Genomes, Progress Report, Household Consumption, Accessory Genome, Economic Policies, Ovis, Double Stranded, Microeconomic Factors, chromatid, Deoxyribonucleic acid, Living Costs, Economic Conditions, BLACK OR AFRICAN AMERICAN, NovaSeq 6000, non-neoplastic, Progress, Field Reports, Benchmarks, Benchmarking, Repeats, Capital, Bardet-Biedl syndrome., disorder, Household Consumptions, Homo sapiens disease, Economic, Best Practice, Double-Stranded DNA, (Deoxyribonucleotide)m, Theories, Nucleic Acid Repetitive Sequences, deoxyribonucleic acids, elements, DNAn, Investigative Reports, Healthcare, DNAs, atom, HHT1, Variation, Black Populations, Policy, Genetic Variations, Economic Policy, Meats, Home Economics, Variations, Altitudes, Indices, Edg, Data Set, Index, Conditions, Hypothesis, DNAn+1, disorders, Metrics, Diversities, lit, medical condition, Factor, Production, Benchmark, Double-Stranded, Ovis dalli, Living Cost, Pangenome, Repetitious Region, Macroeconomic Factors, Consumption, Economics, (Deoxyribonucleotide)n+m, Afro-American, prophase chromosome, Economic Condition, Household, Resource, Consumer Price Index, Investigative Report, Consumer Price, Utility Theory, Repetitious Regions, chemical analysis, Research Reports, Genetic Diversities, condition, Selfish, Health Care, atomo, atomus, Macroeconomic, ds-DNA, atome, desoxyribose nucleic acid, END, little, Repetitive Regions, Direct Repeat, wild sheep, Genes, Factors, Element, Col4a-1, Bardet-Biedl syndrome, interphase chromosome, atoms, Consumer Price Indices, Field, Dall Sheep, whole genome, Genetic Diversity, Home, sheep, DNA Repetitious Regions, Condition, Ovis ammon aries, disease, Report, Health, Pan-genome, Easterlin Hypothesis, Remittance, Chromosome, Reports, Cost of Living, Best Practice Analysis, ds DNA, Desoxyribonukleinsaeure, Repetitive Region, assay, lambs, DNA, ORW1, Sheep, Summary, Dall, Remittances, Field Report, Direct Repeats</description_synonyms></additional><is_claimable>false</is_claimable><name>Genome assembly and whole-genome resequencing study of Butuo Black sheep?Ovis aries?</name><description>The Butuo Black Sheep (BBS) have good high-altitude adaptability, physical condition, and meat production performance. Although the study of genomes has progressed greatly, little is known about the genomes of the Butuo Black Sheep. In this study, we generated a high-quality chromosome-level genome yielded to be 2.95Gb with a contig N50 size of 71.45 Mb and scaffold N50 size of 92.26 Mb. The Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis indicated the genome assembly to be 95.9% complete. The de novo genome prediction revealed that repetitive sequences constitute 47.74% of the entire genome, and long interspersed nuclear elements (LINEs) constituted the largest portion. In addition, we report 50 sheep genomes generated by sequencing DNA samples on the Illumina NovaSeq 6000 platform, with a mean depth of 10.36X and 150 bp paired-end reads. In total, ~1.2 terabytes of raw data were generated, and 99.9% of the clean reads mapped successfully against the sheep reference genome assembly at a coverage of 99.6%. This BBS genome dataset provides valuable resources for studying genetic diversity and evolutionary pattern of BBS.</description><dates><publication>2025-03-30</publication></dates><accession>PRJEB87694</accession><cross_references><TAXONOMY>9940</TAXONOMY></cross_references></HashMap>