<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE268nnn/GSE268580/</Other></files><type>primary</type></body><statusCodeValue>200</statusCodeValue><statusCode>OK</statusCode></file_versions><scores/><additional><omics_type>Genomics</omics_type><species>Homo sapiens</species><gds_type>Genome binding/occupancy profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268580</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>Highly multiplexed single cell chromatin regulator and accessibility profiling elucidates chromatin dynamics in human B cell development and oncogenesis, and reveals an adverse prognostic gene expression signature in B lymphoblastic leukemias</name><description>Developing B cells undergo successive stages of chromatin reorganization which modulate DNA accessibility to control V(D)J recombination and gene transcription. These epigenetic shifts are mediated by histone modifications (e.g., H3K4me3, H3K27me3), histone-modifying enzymes (e.g., MLL1, LSD1), and chromatin remodelers (e.g., CTCF, DNMT1). We combined highly-multiplexed, multi-omic approaches to capture this choreographed dance – from single cell changes in chromatin modulators, to alterations in histone modifications, to genome-wide chromatin accessibility. This epigenetic map of normal human B cell differentiation enabled us to peer into the early origins of B cell leukemias and lymphomas – specifically, stage-specific chromatin accessibility at sites of recurrent chromosomal translocations and oncogenic transcription factors (TF). It further identified a chromatin state characterized by relative depletion of chromatin structure modulators and high leukemic TF accessibility, enriched in a small cohort of B lymphoblastic leukemias and associated with adverse prognosis.</description><dates><publication>2026/06/01</publication></dates><accession>GSE268580</accession><cross_references><GSM>GSM8294452</GSM><GSM>GSM8294451</GSM><GSM>GSM8294461</GSM><GSM>GSM8294450</GSM><GSM>GSM8294460</GSM><GSM>GSM8294456</GSM><GSM>GSM8294455</GSM><GSM>GSM8294454</GSM><GSM>GSM8294453</GSM><GSM>GSM8294449</GSM><GSM>GSM8294459</GSM><GSM>GSM8294448</GSM><GSM>GSM8294458</GSM><GSM>GSM8294447</GSM><GSM>GSM8294457</GSM><GPL>18573</GPL><GSE>268580</GSE><taxon>Homo sapiens</taxon></cross_references></HashMap>