GEOapplication/xmlftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE275nnn/GSE275169/primaryOK200TranscriptomicsCodonopsis pilosulaExpression profiling by high throughput sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275169GEOGSEfalseIntegrated Transcriptome and Metabolome Analyses Reveal the Mechanisms of Stem Color Formation in Codonopsis pilosula Involving Anthocyanin BiosynthesisCodonopsis pilosula, a significant medicinal and culinary plant, necessitates research and innovation in its germplasm. The objective of this study is to uncover the molecular basis of stem anthocyanin pigmentation in a novel cultivar of C. pilosula. We conducted a comparative analysis between a green-stemmed cultivar (CL) and a purple-stemmed cultivar (CZ) using a multi-faceted approach encompassing physiological, transcriptomic, and metabolomic studies.2026/08/31GSE275169GSM8472305GSM8472300GSM8472301GSM8472302GSM8472303GSM847230434638275169Codonopsis pilosula