<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309310/</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Other</omics_type><species>Mus musculus</species><gds_type>Other</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309310</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>Reversion of T cell exhaustion enables cancer vaccine efficacy in BRCA1-deficient ovarian cancer</name><description>Background: BRCA mutations in ovarian cancer (OC) are associated with increased tumor-infiltrating lymphocytes and inflammatory features, yet immunotherapy for OC has failed to meet expectations. This study hypothesizes that BRCA1 or BRCA2 deficiency differently influences the response to cancer vaccine. Methods: We used the syngeneic orthotopic ID8 mouse ovarian tumor models deficient for Trp53, Trp53 and Brca1, or Trp53 and Brca2. Tumor-implanted mice were vaccinated with a dendritic cell-based whole tumor lysate vaccine (termed OCDC) alone or in combination with anti-VEGF therapy, PARP inhibitor, and/or anti-PD-1 immune checkpoint inhibitor. Tumor burden, mice survival and monitoring of T cell responses were evaluated by bioluminescence imaging, flow cytometry and interferon gamma (IFNg)-ELISpot assay. Transcriptomic profiling of tumor cell and immune cell-compartments was performed using NanoString GeoMx digital spatial profiling. Results: Brca1 deficiency—but not Brca2— impairs effectiveness of OCDC vaccine. OCDC vaccine reduced tumor growth rates and improved survival of mice implanted with Trp53-/- and Trp53-/-Brca2-/-ID8 tumors, but was ineffective in mice implanted Trp53-/-Brca1-/- tumor model. Transcriptomic analysis revealed that tumors responsive to OCDC (Brca wild-type or Brca2-/-) underwent metabolic and immunologic reprogramming post-vaccination, unlike Brca1-/- tumors. Inefficacy of the cancer vaccine was driven by a tumor microenvironment that was already inflamed, characterized by a high level of activated yet exhausted T cells, which hinder additional immune activation by vaccination. Combining OCDC with anti-VEGF and PARP inhibitors partially overcame vaccine resistance in Brca1-/- tumors, while adding anti-PD-1 further improved vaccine effectiveness by boosting T cell activity and promoting long-term survival. Conclusion: These findings highlight BRCA1’s role in cancer vaccine sensitivity and support using rational combinations to overcome vaccine inefficacy in BRCA1-mutated OC.</description><dates><publication>2026/06/09</publication></dates><accession>GSE309310</accession><cross_references><GSM>GSM9265092</GSM><GSM>GSM9265093</GSM><GSM>GSM9265094</GSM><GSM>GSM9265095</GSM><GSM>GSM9265096</GSM><GSM>GSM9265097</GSM><GSM>GSM9265098</GSM><GSM>GSM9265099</GSM><GSM>GSM9265090</GSM><GSM>GSM9265091</GSM><GSM>GSM9265081</GSM><GSM>GSM9265082</GSM><GSM>GSM9265083</GSM><GSM>GSM9265084</GSM><GSM>GSM9265085</GSM><GSM>GSM9265086</GSM><GSM>GSM9265087</GSM><GSM>GSM9265088</GSM><GSM>GSM9265089</GSM><GSM>GSM9265080</GSM><GSM>GSM9265191</GSM><GSM>GSM9265070</GSM><GSM>GSM9265071</GSM><GSM>GSM9265192</GSM><GSM>GSM9265072</GSM><GSM>GSM9265193</GSM><GSM>GSM9265194</GSM><GSM>GSM9265073</GSM><GSM>GSM9265074</GSM><GSM>GSM9265195</GSM><GSM>GSM9265075</GSM><GSM>GSM9265196</GSM><GSM>GSM9265197</GSM><GSM>GSM9265076</GSM><GSM>GSM9265077</GSM><GSM>GSM9265198</GSM><GSM>GSM9265078</GSM><GSM>GSM9265199</GSM><GSM>GSM9265079</GSM><GSM>GSM9265190</GSM><GSM>GSM9265180</GSM><GSM>GSM9265060</GSM><GSM>GSM9265181</GSM><GSM>GSM9265061</GSM><GSM>GSM9265182</GSM><GSM>GSM9265062</GSM><GSM>GSM9265183</GSM><GSM>GSM9265063</GSM><GSM>GSM9265184</GSM><GSM>GSM9265185</GSM><GSM>GSM9265064</GSM><GSM>GSM9265065</GSM><GSM>GSM9265186</GSM><GSM>GSM9265066</GSM><GSM>GSM9265187</GSM><GSM>GSM9265188</GSM><GSM>GSM9265067</GSM><GSM>GSM9265068</GSM><GSM>GSM9265189</GSM><GSM>GSM9265069</GSM><GSM>GSM9265170</GSM><GSM>GSM9265171</GSM><GSM>GSM9265050</GSM><GSM>GSM9265051</GSM><GSM>GSM9265172</GSM><GSM>GSM9265052</GSM><GSM>GSM9265173</GSM><GSM>GSM9265174</GSM><GSM>GSM9265053</GSM><GSM>GSM9265054</GSM><GSM>GSM9265175</GSM><GSM>GSM9265055</GSM><GSM>GSM9265176</GSM><GSM>GSM9265177</GSM><GSM>GSM9265056</GSM><GSM>GSM9265057</GSM><GSM>GSM9265178</GSM><GSM>GSM9265058</GSM><GSM>GSM9265179</GSM><GSM>GSM9265059</GSM><GSM>GSM9265160</GSM><GSM>GSM9265040</GSM><GSM>GSM9265161</GSM><GSM>GSM9265162</GSM><GSM>GSM9265041</GSM><GSM>GSM9265042</GSM><GSM>GSM9265163</GSM><GSM>GSM9265043</GSM><GSM>GSM9265164</GSM><GSM>GSM9265165</GSM><GSM>GSM9265044</GSM><GSM>GSM9265045</GSM><GSM>GSM9265166</GSM><GSM>GSM9265046</GSM><GSM>GSM9265167</GSM><GSM>GSM9265168</GSM><GSM>GSM9265047</GSM><GSM>GSM9265048</GSM><GSM>GSM9265169</GSM><GSM>GSM9265049</GSM><GSM>GSM9264739</GSM><GSM>GSM9264859</GSM><GSM>GSM9264738</GSM><GSM>GSM9264979</GSM><GSM>GSM9264737</GSM><GSM>GSM9264858</GSM><GSM>GSM9264736</GSM><GSM>GSM9264857</GSM><GSM>GSM9264978</GSM><GSM>GSM9264856</GSM><GSM>GSM9264977</GSM><GSM>GSM9264735</GSM><GSM>GSM9264976</GSM><GSM>GSM9264734</GSM><GSM>GSM9264855</GSM><GSM>GSM9264865</GSM><GSM>GSM9264744</GSM><GSM>GSM9264986</GSM><GSM>GSM9264985</GSM><GSM>GSM9264743</GSM><GSM>GSM9264864</GSM><GSM>GSM9264742</GSM><GSM>GSM9264863</GSM><GSM>GSM9264984</GSM><GSM>GSM9264862</GSM><GSM>GSM9264983</GSM><GSM>GSM9264741</GSM><GSM>GSM9264982</GSM><GSM>GSM9264740</GSM><GSM>GSM9264861</GSM><GSM>GSM9264860</GSM><GSM>GSM9264981</GSM><GSM>GSM9264980</GSM><GSM>GSM9264729</GSM><GSM>GSM9264728</GSM><GSM>GSM9264849</GSM><GSM>GSM9264727</GSM><GSM>GSM9264848</GSM><GSM>GSM9264969</GSM><GSM>GSM9264968</GSM><GSM>GSM9264726</GSM><GSM>GSM9264847</GSM><GSM>GSM9264725</GSM><GSM>GSM9264846</GSM><GSM>GSM9264967</GSM><GSM>GSM9264845</GSM><GSM>GSM9264966</GSM><GSM>GSM9264724</GSM><GSM>GSM9264965</GSM><GSM>GSM9264723</GSM><GSM>GSM9264844</GSM><GSM>GSM9264733</GSM><GSM>GSM9264854</GSM><GSM>GSM9264975</GSM><GSM>GSM9264853</GSM><GSM>GSM9264974</GSM><GSM>GSM9264732</GSM><GSM>GSM9264731</GSM><GSM>GSM9264852</GSM><GSM>GSM9264973</GSM><GSM>GSM9264730</GSM><GSM>GSM9264851</GSM><GSM>GSM9264972</GSM><GSM>GSM9264850</GSM><GSM>GSM9264971</GSM><GSM>GSM9264970</GSM><GSM>GSM9264719</GSM><GSM>GSM9264839</GSM><GSM>GSM9264718</GSM><GSM>GSM9264959</GSM><GSM>GSM9264717</GSM><GSM>GSM9264838</GSM><GSM>GSM9264716</GSM><GSM>GSM9264837</GSM><GSM>GSM9264958</GSM><GSM>GSM9264836</GSM><GSM>GSM9264957</GSM><GSM>GSM9264715</GSM><GSM>GSM9264956</GSM><GSM>GSM9264714</GSM><GSM>GSM9264835</GSM><GSM>GSM9264713</GSM><GSM>GSM9264834</GSM><GSM>GSM9264955</GSM><GSM>GSM9264833</GSM><GSM>GSM9264954</GSM><GSM>GSM9264712</GSM><GSM>GSM9264722</GSM><GSM>GSM9264843</GSM><GSM>GSM9264964</GSM><GSM>GSM9264842</GSM><GSM>GSM9264963</GSM><GSM>GSM9264721</GSM><GSM>GSM9264962</GSM><GSM>GSM9264720</GSM><GSM>GSM9264841</GSM><GSM>GSM9264840</GSM><GSM>GSM9264961</GSM><GSM>GSM9264960</GSM><GSM>GSM9264709</GSM><GSM>GSM9264708</GSM><GSM>GSM9264829</GSM><GSM>GSM9264707</GSM><GSM>GSM9264828</GSM><GSM>GSM9264949</GSM><GSM>GSM9264948</GSM><GSM>GSM9264706</GSM><GSM>GSM9264827</GSM><GSM>GSM9264705</GSM><GSM>GSM9264947</GSM><GSM>GSM9264826</GSM><GSM>GSM9264704</GSM><GSM>GSM9264825</GSM><GSM>GSM9264946</GSM><GSM>GSM9264945</GSM><GSM>GSM9264703</GSM><GSM>GSM9264824</GSM><GSM>GSM9264702</GSM><GSM>GSM9264823</GSM><GSM>GSM9264944</GSM><GSM>GSM9264822</GSM><GSM>GSM9264943</GSM><GSM>GSM9264701</GSM><GSM>GSM9264711</GSM><GSM>GSM9264832</GSM><GSM>GSM9264953</GSM><GSM>GSM9264710</GSM><GSM>GSM9264831</GSM><GSM>GSM9264952</GSM><GSM>GSM9264830</GSM><GSM>GSM9264951</GSM><GSM>GSM9264950</GSM><GSM>GSM9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5001</GSM><GSM>GSM9265002</GSM><GSM>GSM9265123</GSM><GSM>GSM9265244</GSM><GSM>GSM9265245</GSM><GSM>GSM9265003</GSM><GSM>GSM9265124</GSM><GSM>GSM9265125</GSM><GSM>GSM9265246</GSM><GSM>GSM9265004</GSM><GSM>GSM9265005</GSM><GSM>GSM9265126</GSM><GSM>GSM9265247</GSM><GSM>GSM9265248</GSM><GSM>GSM9265006</GSM><GSM>GSM9265127</GSM><GSM>GSM9265128</GSM><GSM>GSM9265249</GSM><GSM>GSM9265007</GSM><GSM>GSM9265008</GSM><GSM>GSM9265129</GSM><GSM>GSM9265119</GSM><GSM>GSM9265230</GSM><GSM>GSM9265231</GSM><GSM>GSM9265110</GSM><GSM>GSM9265111</GSM><GSM>GSM9265232</GSM><GSM>GSM9265112</GSM><GSM>GSM9265233</GSM><GSM>GSM9265234</GSM><GSM>GSM9265113</GSM><GSM>GSM9265114</GSM><GSM>GSM9265235</GSM><GSM>GSM9265115</GSM><GSM>GSM9265236</GSM><GSM>GSM9265237</GSM><GSM>GSM9265116</GSM><GSM>GSM9265117</GSM><GSM>GSM9265238</GSM><GSM>GSM9265118</GSM><GSM>GSM9265239</GSM><GSM>GSM9265108</GSM><GSM>GSM9265229</GSM><GSM>GSM9265109</GSM><GSM>GSM9265220</GSM><GSM>GSM9265100</GSM><GSM>GSM9265221</GSM><GSM>GSM9265101</GSM><GSM>GSM9265222</GSM><GSM>GSM9265102</GSM><GSM>GSM9265223</GSM><GSM>GSM9265103</GSM><GSM>GSM9265224</GSM><GSM>GSM9265225</GSM><GSM>GSM9265104</GSM><GSM>GSM9265105</GSM><GSM>GSM9265226</GSM><GSM>GSM9265106</GSM><GSM>GSM9265227</GSM><GSM>GSM9265228</GSM><GSM>GSM9265107</GSM><GSM>GSM9265218</GSM><GSM>GSM9265219</GSM><GSM>GSM9265210</GSM><GSM>GSM9265211</GSM><GSM>GSM9265212</GSM><GSM>GSM9265213</GSM><GSM>GSM9265214</GSM><GSM>GSM9265215</GSM><GSM>GSM9265216</GSM><GSM>GSM9265217</GSM><GSM>GSM9265207</GSM><GSM>GSM9265208</GSM><GSM>GSM9265209</GSM><GSM>GSM9265200</GSM><GSM>GSM9265201</GSM><GSM>GSM9265202</GSM><GSM>GSM9265203</GSM><GSM>GSM9265204</GSM><GSM>GSM9265205</GSM><GSM>GSM9265206</GSM><GPL>24247</GPL><GSE>309310</GSE><taxon>Mus musculus</taxon></cross_references></HashMap>