{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE318nnn/GSE318038/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Homo sapiens"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318038"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"Protective IFIH1 variant reduces islet stress and dysfunction in a type 1 diabetes genetic background","description":"Genome-wide association studies have identified IFIH1, which encodes the double-stranded RNA sensor MDA5, as a type 1 diabetes (T1D) risk locus. The IFIH1 E627* variant is associated with protection from T1D, whereas A946T is associated with increased risk. To examine how these variants influence islet responses to inflamattory and viral stress, we used CRISPR-Cas9 to engineer E627* or A946T into human pluripotent stem cells from a T1D donor and differentiated them into stem cell-derived islets (SC-islets). SC-islets were exposed to IFNα, poly(I:C), or coxsackievirus B3 and analyzed by single-cell RNA sequencing and functional assays. E627* SC-islets compared to A946T displayed reduced inflammatory and stress responses with lower apoptosis, viral burden, mitochondrial dysfunction, and insulin secretory impairment. These findings support a protective role for IFIH1 E627* in human islet responses to inflammatory and viral stress and provide insight into genetic mechanisms potentially linked to T1D pathogenesis.","dates":{"publication":"2026/08/19"},"accession":"GSE318038","cross_references":{"GSM":["GSM9485171","GSM9485170"],"GPL":["24676"],"GSE":["318038"],"taxon":["Homo sapiens"]}}