{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE322nnn/GSE322777/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"species":["Mus musculus"],"gds_type":["Genome binding/occupancy profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE322777"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"ChIP-seq of RNA polymerase II and HNF4alpha in mouse liver after cytokine stimulation (WT vs TG)","description":"ChIP-seq was performed on liver samples from 6-week-old male mice (WT and TG) following a single intravenous injection of mouse TNFalpha (BioLegend, 7.5 ug/kg) or vehicle. Livers were collected 4 h post-injection. ChIP was carried out using anti-RNA polymerase II (Active Motif) or anti-HNF4alpha (Abcam) with matched input controls. Single-end reads were sequenced on an Illumina HiSeq 2000 platform, aligned to the mouse reference genome (mm10) using Bowtie, and peaks were called using MACS2 (v2.0.10.20120913) with matched input controls.","dates":{"publication":"2026/04/01"},"accession":"GSE322777","cross_references":{"GSM":["GSM9558276","GSM9558275","GSM9558278","GSM9558277","GSM9558279","GSM9558281","GSM9558280","GSM9558282","GSM9558274"],"GPL":["13112"],"GSE":["322777"],"taxon":["Mus musculus"],"PMID":["[41892336]"]}}