<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327794/</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Transcriptomics</omics_type><species>Homo sapiens</species><gds_type>Expression profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327794</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>The periphery of nuclear speckles defines a spatially and temporally regulated compartment of long-lived intron-retained RNAs that resolves during mitosis</name><description>RNA localization adds a fundamental layer to gene expression by determining when and where translation-ready mRNAs become available. Here, we identify a distinct subnuclear RNA niche at the nuclear speckle periphery that links intron retention to cell-cycle-timed RNA release. Using compartment-resolved transcriptional inhibition, sequence-based deep learning, and single-molecule and super-resolution RNA imaging in human pluripotent stem cells, we define a class of nuclear RNAs with long-lived retained introns (LL-IR-RNAs) that maintain stable intron retention for hours and are enriched in genome maintenance and mitosis regulators, including centromere and kinetochore assembly, DNA repair, and telomere maintenance. Long-lived retained introns are characterized by elevated GC content, predicted structural stability, and nuclear speckle-associated RBPs. In interphase, LL-IR-RNAs localize to a nuclear speckle-proximal niche conserved between cell types. During mitotic remodeling, they undergo coordinated, kinase-dependent splicing and populate the cytoplasm of early G1 daughter cells. These findings link cis-encoded intronic features, subnuclear organization and mitotic remodeling to temporal control of RNA fate.</description><dates><publication>2026/06/24</publication></dates><accession>GSE327794</accession><cross_references><GSM>GSM9666070</GSM><GSM>GSM9666063</GSM><GSM>GSM9666062</GSM><GSM>GSM9666061</GSM><GSM>GSM9666060</GSM><GSM>GSM9666067</GSM><GSM>GSM9666056</GSM><GSM>GSM9666066</GSM><GSM>GSM9666055</GSM><GSM>GSM9666065</GSM><GSM>GSM9666064</GSM><GSM>GSM9666059</GSM><GSM>GSM9666069</GSM><GSM>GSM9666058</GSM><GSM>GSM9666057</GSM><GSM>GSM9666068</GSM><GPL>24676</GPL><GSE>327794</GSE><taxon>Homo sapiens</taxon></cross_references></HashMap>