{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328646/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Mus musculus"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328646"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"Image Tracing of Inflammatory Intestinal Organoids via Computational Clearing","description":"Gene expression of dextran sulfate sodium (DSS)-treated mouse intestinal organoids (mIOs) was examined by RNA-seq to characterize the inflammatory response. Gene set enrichment analysis (GSEA) revealed the upregulation of inflammatory pathways, including TNF-α signaling via NF-κB and IL-6/JAK/STAT3 signaling, alongside the downregulation of stem cell maintenance and proliferation pathways, including WNT/β-catenin signaling and PI3K/AKT/mTOR signaling.","dates":{"publication":"2026/04/26"},"accession":"GSE328646","cross_references":{"GSM":["GSM9686527","GSM9686528"],"GPL":["34290"],"GSE":["328646"],"taxon":["Mus musculus"]}}