GEOapplication/xmlftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328646/primaryOK200TranscriptomicsMus musculusExpression profiling by high throughput sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328646GEOGSEfalseImage Tracing of Inflammatory Intestinal Organoids via Computational ClearingGene expression of dextran sulfate sodium (DSS)-treated mouse intestinal organoids (mIOs) was examined by RNA-seq to characterize the inflammatory response. Gene set enrichment analysis (GSEA) revealed the upregulation of inflammatory pathways, including TNF-α signaling via NF-κB and IL-6/JAK/STAT3 signaling, alongside the downregulation of stem cell maintenance and proliferation pathways, including WNT/β-catenin signaling and PI3K/AKT/mTOR signaling.2026/04/26GSE328646GSM9686527GSM968652834290328646Mus musculus