<HashMap><database>GEO</database><scores/><additional><omics_type>Transcriptomics</omics_type><species>Pseudomonas putida KT2440</species><gds_type>Expression profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333646</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>Transcriptomic analysis of (S)-1,3-butanediol degradation pathway in Pseudomonas putida KT2440</name><description>(S)-1,3-butanediol [(S)-1,3-BDO] is a chiral diol and stereoisomer of (R)-1,3-BDO with potential applications in the chemical and pharmaceutical industries; however, its microbial degradation pathway remains poorly understood. In this study, we performed strand-specific, paired-end RNA-seq transcriptomic analysis of Pseudomonas putida KT2440 grown on (S)-1,3-BDO and (S)-3-hydroxybutyrate [(S)-3-HB] as sole carbon sources to elucidate the underlying degradation pathway. Differential gene expression analysis was performed to identify genes specifically induced during (S)-1,3-BDO and (S)-3-HB metabolism, providing insight into the enzymatic steps and regulatory mechanisms governing their catabolism in P. putida KT2440.</description><dates><publication>2026/06/01</publication></dates><accession>GSE333646</accession><cross_references><GSM>GSM9770350</GSM><GSM>GSM9770349</GSM><GSM>GSM9770347</GSM><GSM>GSM9770348</GSM><GPL>37044</GPL><GSE>333646</GSE><taxon>Pseudomonas putida KT2440</taxon></cross_references></HashMap>