{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335065/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Rhodotorula toruloides"," Synechococcus elongatus PCC 7942 = FACHB-805"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335065"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"Gene Expression Profiling of Synechococcus elongatus PCC 7942 and Rhodotorula toruloides NBRC 0880 (Rhodosporidium toruloides IFO0880) in Co-culture and Membrane-Separated Bioreactor Configurations Under Various Stress and Nutrient Conditions","description":"This RNA-seq study examines transcriptional responses of a cyanobacterium–yeast co-culture system comprising Synechococcus elongatus PCC 7942 and Rhodotorula toruloides NBRC 0880 (Rhodosporidium toruloides IFO0880) under multiple conditions. Experiments included planktonic co-cultures in 50 mL tubes subjected to chemical stressors (oxidative stress, photosynthesis inhibition), temperature stress, nutrient limitation (nitrogen, phosphorus), pH extremes, and heterotrophic conditions, as well as physically separated co-cultures in a 600 mL membrane bioreactor. Axenic controls for Synechococcus elongatus PCC 7942 were included for comparison. Differential gene expression analysis provides insight into interspecies interactions and individual organism responses across co-culture configurations.","dates":{"publication":"2026/06/11"},"accession":"GSE335065","cross_references":{"GSM":["GSM9805324","GSM9805325","GSM9805326","GSM9805327","GSM9805328","GSM9805329","GSM9805360","GSM9805283","GSM9805284","GSM9805361","GSM9805285","GSM9805362","GSM9805286","GSM9805363","GSM9805364","GSM9805287","GSM9805320","GSM9805288","GSM9805321","GSM9805365","GSM9805289","GSM9805366","GSM9805322","GSM9805323","GSM9805280","GSM9805281","GSM9805282","GSM9805335","GSM9805336","GSM9805337","GSM9805338","GSM9805339","GSM9805294","GSM9805295","GSM9805296","GSM9805297","GSM9805330","GSM9805331","GSM9805298","GSM9805332","GSM9805299","GSM9805333","GSM9805334","GSM9805290","GSM9805291","GSM9805292","GSM9805293","GSM9805346","GSM9805302","GSM9805303","GSM9805347","GSM9805348","GSM9805304","GSM9805305","GSM9805349","GSM9805306","GSM9805307","GSM9805308","GSM9805309","GSM9805340","GSM9805341","GSM9805342","GSM9805343","GSM9805300","GSM9805344","GSM9805345","GSM9805301","GSM9805357","GSM9805313","GSM9805314","GSM9805358","GSM9805315","GSM9805359","GSM9805316","GSM9805317","GSM9805318","GSM9805319","GSM9805350","GSM9805351","GSM9805352","GSM9805276","GSM9805353","GSM9805354","GSM9805277","GSM9805310","GSM9805311","GSM9805355","GSM9805278","GSM9805312","GSM9805279","GSM9805356"],"GPL":["37104","37105"],"GSE":["335065"],"taxon":["Rhodotorula toruloides"," Synechococcus elongatus PCC 7942 = FACHB-805"]}}