<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335951/</Other></files><type>primary</type></body><statusCodeValue>200</statusCodeValue><statusCode>OK</statusCode></file_versions><scores/><additional><omics_type>Transcriptomics</omics_type><species>Homo sapiens</species><gds_type>Expression profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335951</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>RamDA-seq analysis of CRISPRa-mediated RELA activation for proof-of-concept validation of CATaN</name><description>This dataset was generated to validate CATaN (Canonical correlation Analysis of Transcriptome and TF-gene regulatory Networks), an unsupervised framework that integrates transcriptomic data with transcription factor (TF) gene regulatory networks. To test whether CATaN correctly recovers the transcriptional program driven by a specific TF, we activated RELA, a subunit of NF-κB, in Jurkat cells using CRISPR activation (CRISPRa; dCas9-VP64 with a single guide RNA targeting RELA) and compared it with a control guide RNA. Transcriptomes were profiled by RamDA-seq. Transductions were performed in triplicate for each condition, and cells were harvested at five, six, and seven days post-transduction. Differential expression analysis showed concordant directional changes in RELA-regulated genes; CATaN applied to these data assigned higher CC1 loadings to RELA ChIP-seq samples than to other TFs. Together, these results provide proof-of-concept support for the method.</description><dates><publication>2026/06/29</publication></dates><accession>GSE335951</accession><cross_references><GSM>GSM9824149</GSM><GSM>GSM9824167</GSM><GSM>GSM9824145</GSM><GSM>GSM9824168</GSM><GSM>GSM9824146</GSM><GSM>GSM9824169</GSM><GSM>GSM9824147</GSM><GSM>GSM9824148</GSM><GSM>GSM9824141</GSM><GSM>GSM9824163</GSM><GSM>GSM9824164</GSM><GSM>GSM9824142</GSM><GSM>GSM9824165</GSM><GSM>GSM9824143</GSM><GSM>GSM9824144</GSM><GSM>GSM9824166</GSM><GSM>GSM9824160</GSM><GSM>GSM9824161</GSM><GSM>GSM9824162</GSM><GSM>GSM9824140</GSM><GSM>GSM9824139</GSM><GSM>GSM9824156</GSM><GSM>GSM9824157</GSM><GSM>GSM9824158</GSM><GSM>GSM9824159</GSM><GSM>GSM9824152</GSM><GSM>GSM9824174</GSM><GSM>GSM9824153</GSM><GSM>GSM9824154</GSM><GSM>GSM9824155</GSM><GSM>GSM9824170</GSM><GSM>GSM9824171</GSM><GSM>GSM9824172</GSM><GSM>GSM9824150</GSM><GSM>GSM9824173</GSM><GSM>GSM9824151</GSM><GPL>34284</GPL><GSE>335951</GSE><taxon>Homo sapiens</taxon></cross_references></HashMap>