<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE338nnn/GSE338087/</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Transcriptomics</omics_type><species>Homo sapiens</species><gds_type>Expression profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338087</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>Patient tumor bulk RNA-seq analysis of the pre-axi-cel treatment tumor microenvironment in large B cell lymphoma</name><description>We examined the tumor immune infiltrate and its relationship with clinical outcomes in patients with LBCL receiving Axicabtagene ciloleChimeric antigen receptor (CAR) T cell therapies have revolutionized B cell malignancy treatment, but many patients with large B cell lymphoma (LBCL) experience primary resistance or relapse. To uncover resistance mechanisms, we examined pre-infusion tumor biopsies and observed that increased immunoregulatory macrophages correlate with poor clinical responses. In murine models, CAR T cell-produced interferon-gamma (IFN-) upregulates inducible nitric oxide synthase (iNOS, NOS2) in immunoregulatory macrophages, impairing CAR T cell function. Proteomic profiling revealed that iNOS-expressing macrophages promote apoptosis and cell cycle arrest while downregulating protein synthesis machinery in CAR T cells. Metabolically, CAR T cells exhibit reduced glycolytic intermediates and altered tricarboxylic acid (TCA) cycle activity. Pharmacological inhibition of iNOS enhances CAR T cell treatment efficacy in vivo. Notably, elevated levels of iNOS+CD14+ monocytes in leukaphereses are associated with non-durable responses to CAR T cells. Targeting iNOS in immunoregulatory macrophages, potentially by modulating CAR T-produced IFN-, could improve LBCL outcomes.</description><dates><publication>2026/07/09</publication></dates><accession>GSE338087</accession><cross_references><GSM>GSM9866371</GSM><GSM>GSM9866360</GSM><GSM>GSM9866370</GSM><GSM>GSM9866373</GSM><GSM>GSM9866362</GSM><GSM>GSM9866361</GSM><GSM>GSM9866372</GSM><GSM>GSM9866383</GSM><GSM>GSM9866379</GSM><GSM>GSM9866368</GSM><GSM>GSM9866367</GSM><GSM>GSM9866359</GSM><GSM>GSM9866369</GSM><GSM>GSM9866364</GSM><GSM>GSM9866375</GSM><GSM>GSM9866374</GSM><GSM>GSM9866363</GSM><GSM>GSM9866366</GSM><GSM>GSM9866365</GSM><GPL>24676</GPL><GSE>338087</GSE><taxon>Homo sapiens</taxon></cross_references></HashMap>