{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE343nnn/GSE343567/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Acanthamoeba castellanii"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343567"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"RNA-seq profiling of Acanthamoeba castellanii strain Neff encystation timecourse","description":"The amoebozoan Acanthamoeba castellanii is an important cause of infectious blindness and a key evolutionary outgroup to humans and fungi. We conducted complementary proteomic and transcriptomic profiling of an Acanthamoeba encystation timecourse. For the transcriptomics, we used both short read RNA-seq (Illumina) and long-read MAS-ISO-seq (PacBio). The bulk RNA-seq transcriptomics are reported here.","dates":{"publication":"2026/08/19"},"accession":"GSE343567","cross_references":{"GSM":["GSM9957366","GSM9957377","GSM9957367","GSM9957378","GSM9957368","GSM9957379","GSM9957369","GSM9957373","GSM9957362","GSM9957363","GSM9957374","GSM9957364","GSM9957375","GSM9957376","GSM9957365","GSM9957370","GSM9957371","GSM9957372"],"GPL":["34859"],"GSE":["343567"],"taxon":["Acanthamoeba castellanii"]}}