<HashMap><database>GEO</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Other>ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE344nnn/GSE344459/</Other></files><type>primary</type></body><statusCodeValue>200</statusCodeValue><statusCode>OK</statusCode></file_versions><scores/><additional><omics_type>Transcriptomics</omics_type><species>Mus musculus</species><gds_type>Expression profiling by high throughput sequencing</gds_type><full_dataset_link>https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344459</full_dataset_link><repository>GEO</repository><entry_type>GSE</entry_type></additional><is_claimable>false</is_claimable><name>Optineurin-deficiency Collapses the Host Endolysosomal Network and Impairs Xenophagy to Accelerate Mycobacterium tuberculosis Growth</name><description>Selective autophagy is a host defense mechanism against Mycobacterium tuberculosis (Mtb) that restricts bacterial growth by targeting ubiquitin-coated bacilli for lysosomal degradation via autophagy receptors. Optineurin is a selective autophagy receptor that targets pathogens and modulates immune signaling, yet its precise structural mechanism during Mtb infection remains poorly defined. Here, we show that while Optineurin-deficiency spares the global host transcriptomic response to infection, it collapses the host endolysosomal network, decreasing LAMP1⁺ and LysoTracker⁺ reserves by half. Multi-dose bafilomycin A1 flux assays demonstrated that this structural depletion selectively blocks the dynamic, directional trafficking and functional delivery of autophagosomes to the pathogen, significantly reducing Mtb-DQ-BSA colocalization. Genetic complementation restored bacterial restriction in a manner dependent on three phosphosites (Ser187, Ser530, and the uncharacterized Ser556). In the context of reduced autophagic containment and increased Mtb replication, Optineurin-deficiency accelerated necrotic-like host cell death. In vivo, Optineurin-deficiency enhanced bacterial replication and impaired the Type I interferon response during acute Mtb infection but did not affect long-term survival. Together, these findings identify Optineurin as a critical regulator of autophagic flux, host cell death, and Type I interferon responses that limit early Mtb pathogenesis.</description><dates><publication>2026/08/25</publication></dates><accession>GSE344459</accession><cross_references><GSM>GSM9979302</GSM><GSM>GSM9979303</GSM><GSM>GSM9979300</GSM><GSM>GSM9979301</GSM><GSM>GSM9979306</GSM><GSM>GSM9979304</GSM><GSM>GSM9979305</GSM><GSM>GSM9979295</GSM><GSM>GSM9979298</GSM><GSM>GSM9979299</GSM><GSM>GSM9979296</GSM><GSM>GSM9979297</GSM><GPL>34290</GPL><GSE>344459</GSE><taxon>Mus musculus</taxon></cross_references></HashMap>