{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE346nnn/GSE346710/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Mus musculus"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE346710"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"Allele-resolved liver transcriptomes of CC032 x CC072 F1 mice quantified against a Collaborative Cross founder pantranscriptome","description":"RNA-seq on liver tissue from the same two 25-day-old CC032 x CC072 F1 hybrid mice profiled by ATAC-seq in GSE345488 (F19 and F20). Reads were aligned to a spliced Collaborative Cross founder pangenome, which represents each Ensembl transcript by the distinct sequences it takes across the founders, and quantified in a haplotype-aware manner: at each gene the most likely founder-haplotype pair is inferred from read compatibilities, and abundance is then estimated for each haplotype-specific transcript of that pair. The data accompany the allele-specific chromatin accessibility analysis and allow accessibility and expression to be compared haplotype by haplotype in the same animals.","dates":{"publication":"2026/09/16"},"accession":"GSE346710","cross_references":{"GSM":["GSM10038966","GSM10038967"],"GPL":["24247"],"GSE":["346710"],"taxon":["Mus musculus"]}}