GEOapplication/xmlftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE346nnn/GSE346710/primaryOK200TranscriptomicsMus musculusExpression profiling by high throughput sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE346710GEOGSEfalseAllele-resolved liver transcriptomes of CC032 x CC072 F1 mice quantified against a Collaborative Cross founder pantranscriptomeRNA-seq on liver tissue from the same two 25-day-old CC032 x CC072 F1 hybrid mice profiled by ATAC-seq in GSE345488 (F19 and F20). Reads were aligned to a spliced Collaborative Cross founder pangenome, which represents each Ensembl transcript by the distinct sequences it takes across the founders, and quantified in a haplotype-aware manner: at each gene the most likely founder-haplotype pair is inferred from read compatibilities, and abundance is then estimated for each haplotype-specific transcript of that pair. The data accompany the allele-specific chromatin accessibility analysis and allow accessibility and expression to be compared haplotype by haplotype in the same animals.2026/09/16GSE346710GSM10038966GSM1003896724247346710Mus musculus