{"database":"GEO","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE348nnn/GSE348087/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Transcriptomics"],"species":["Homo sapiens"],"gds_type":["Expression profiling by high throughput sequencing"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348087"],"repository":["GEO"],"entry_type":["GSE"],"additional_accession":[]},"is_claimable":false,"name":"Detecting Fusion Transcripts in Huh7 cells with Long-Read RNA-seq","description":"This study is a comparison of sequencing technologies and library preparations protocols performed on RNA extracted from Huh-7 cells, a human hepatocellular carcinoma (HCC) cell line, for which a few characteristic fusion transcripts have previously been reported. The sequencing platforms and library types include Oxford Nanopore Technologies (ONT) MinION direct-cDNA, ONT MinION direct-RNA and ONT MinION PCR-cDNA, PacBio Revio Kinnex sequencing. Additionally, this study includes matched short-read sequencing data from the Illumina NovaSeq platform.","dates":{"publication":"2026/09/26"},"accession":"GSE348087","cross_references":{"GSM":["GSM10066200","GSM10066201","GSM10066198","GSM10066199","GSM10066202","GSM10066193","GSM10066196","GSM10066197","GSM10066194","GSM10066195"],"GPL":["34284","34382","24106"],"GSE":["348087"],"taxon":["Homo sapiens"]}}