{"database":"GNPS","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://massive-ftp.ucsd.edu/v01/MSV000079531/"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":0,"searchCount":0},"additional":{"omics_type":["Metabolomics"],"submitter":["Pavel Pevzner"],"instrument_platform":["LTQ Orbitrap Velos"],"species":["Streptomyces"],"full_dataset_link":["https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=802bf8942ad7410a81bc4d3673f947e0"],"sample_protocol":[""],"repository":["GNPS"],"file_size":["11"],"ptm_modification":["MS:1002864 - No post-translational-modifications are included in the identified peptides of this dataset"],"data_protocol":[""],"citation_count":["0"],"additional_accession":[]},"is_claimable":false,"name":"GNPS Genomics Demo Submission","description":"This is a demo GNPS-genomics submission, providing an example of a submission that is compatible with NRPquest / RiPPquest / Glycogenomics and other MS/MS-genomic tools that are becoming available at GNPS. MS/MS data should be uploaded as Peak List / Raw Spectrum as usual. Sequence data should be uploaded as \"Sequence Databases\" in fasta format. In addition, the user need to create an excel file described below, save it as \"Tab Delimited Text (.txt)\" with the name \"metabolome_genome_link.txt\", and upload it as \"Supplementary Files\". metabolome_genome_link.txt file should have a first row header \"SpectrumFile SequenceFile\" and then in each row, there should be a spectrum file and a sequence file that the spectrum file should be searched against. An example can be :\n\nSpectrumFile SequenceFile\nspectrum_1.mzXML sequence_1.fasta\nspectrum_2a.mzXML sequence_2.fasta\nspectrum_2b.mzXML sequence_2.fasta\nspectrum_3.mzXML sequence_3a.fasta\nspectrum_3.mzXML sequence_3b.fasta\n\nIn this case, spectrum_1.mzXML gets searched against seqeunce_1.mzXML, spectrum_2a.mzXML and spectrum_2b.mzXML get searched against sequence_2.fasta, and spectrum_3.mzXML gets searched against both sequence_3a.fasta and sequence_3b.fasta.\n\nTo avoid time-consuming sequence data uploads, the user also have the option to simply put refseq or genbank accession numbers instead of uploading a fasta file as \"Sequence database\". To do this, the user should enter \"#RefSeq:\" and \"#GeneBank:\"  followed by RefSeq or GeneBank accession. For example both\n\nspectrum_albus.mzXML #RefSeq:GCF_000359525.1\n\nand \n\nspectrum_albus.mzXML #GenBank:GCA_000359525.1\n\nare valid entries, and they search spectrum_albus.mzXML against :\n\nhttp://www.ncbi.nlm.nih.gov/assembly/GCF_000359525.1/\n\nPlease see the demo dataset submission for more information.\n","dates":{"publication":"Thu Feb 25 17:18:00 GMT 2016"},"accession":"MSV000079531","cross_references":{"TAXONOMY":["1883"]}}