{"database":"GPMDB","file_versions":[],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":47,"searchCount":5},"additional":{"omics_type":["Other"],"submitter":["Ferl RJ, et al."],"instrument_platform":["Instrument"],"disease":["Not Available"],"brenda_tissue":["Not available"],"species":["Ath1"],"submitter_mail":["jinkoh@ufl.edu"],"publication":["25517942"],"submitter_affiliation":["Department of Horticultural Sciences, Program in Plant Molecular and Cellular Biology, University of Florida"],"model":["http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014290","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014291","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014281","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014292","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014282","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014293","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014294","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014283","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014295","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014284","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014286","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014287","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014288","http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014289"],"cell_type":["Not available"],"repository":["GPMDB"],"pubmed_abstract":["Life in spaceflight demonstrates remarkable acclimation processes within the specialized habitats of vehicles subjected to the myriad of unique environmental issues associated with orbital trajectories. To examine the response processes that occur in plants in space, leaves and roots from Arabidopsis (Arabidopsis thaliana) seedlings from three GFP reporter lines that were grown from seed for 12 days on the International Space Station and preserved on orbit in RNAlater were returned to Earth and analyzed by using iTRAQ broad-scale proteomics procedures. Using stringent criteria, we identified over 1500 proteins, which included 1167 leaf proteins and 1150 root proteins we were able to accurately quantify. Quantification revealed 256 leaf proteins and 358 root proteins that showed statistically significant differential abundance in the spaceflight samples compared to ground controls, with few proteins differentially regulated in common between leaves and roots. This indicates that there are measurable proteomics responses to spaceflight and that the responses are organ-specific. These proteomics data were compared with transcriptome data from similar spaceflight samples, showing that there is a positive but limited relationship between transcriptome and proteome regulation of the overall spaceflight responses of plants. These results are discussed in terms of emergence understanding of plant responses to spaceflight particularly with regard to cell wall remodeling, as well as in the context of deriving multiple omics data sets from a single on-orbit preservation and operations approach."],"pubmed_title":["Spaceflight induces specific alterations in the proteomes of Arabidopsis."],"pubmed_authors":["Ferl Robert J RJ,Koh Jin J,Denison Fiona F,Paul Anna-Lisa AL,","Ferl Robert J RJ, Koh Jin J, Denison Fiona F, Paul Anna-Lisa AL"],"name_synonyms":["Arabidopsis, Arabidopsis thalianas, Cresses, A., A. thalianas, thalianas, Arabidopsis thaliana, Mouse-ear Cress, Cress, thaliana, Mouse ear, A. thaliana, Arabidopses, Mouse-ear Cresses, Proteomes, Mouse-ear, Cardaminopsis."],"description_synonyms":["data, lumen space, lumen, anatomical spaces, space."],"pubmed_title_synonyms":["Arabidopsis, Arabidopsis thalianas, Cresses, A., A. thalianas, thalianas, Arabidopsis thaliana, Mouse-ear Cress, Cress, thaliana, Mouse ear, A. thaliana, Arabidopses, Mouse-ear Cresses, Proteomes, Mouse-ear, Cardaminopsis."],"pubmed_abstract_synonyms":["projections, Plant Sprout, scale tissue, Eye Sockets, lifespan, Transcriptome Profile, lamellae, A., Pflanze, peltate hair, diaspore (broad), Eye, Gene Expression Profile, Gene, Profiles, broad, GRO:0005339, GRO:0005338, orbit, process of organ, Eye., Cardaminopsis, element, viridiplantae, protrusion, lamella, Readability, Arabidopsis thalianas, exact), responsivity, A. thalianas, Eye Socket, Acclimation, Sprouted Seed, thalianas, Gene Products, Malted, eye socket, Walls, organ, plantae, Cell Walls, reactivity, seed, Malted Grain, Grain, Cresses, bony orbit, entire lifespan, entire life cycle, orbit of skull, plant peltate hair, Profile, Mouse-ear Cress, Plant Embryo, Zygote, plants, proteins, ridges, Signatures, Mouse-ear, thale-cress, radix (exact), Expression Signature, climbing root (narrow), anatomical unit, papilla, body organ, Sprouted, Transcriptomes, Zygotes, Cress, Mouse ear, associated, laminae, Arabidopses, Socket, radices (exact, data, lumen, anatomical protrusion, Transcriptome, wide/broad, Malted Grains, Arbisopsis thaliana, ra&#237z (Spanish, anatomical process, space, plural), land plants, Arabidopsis thaliana, Proteins, Expression Profiles, lamina, flanges, aerial root (narrow), A. thaliana, Sprout, results, Cell, all, whole transcriptome, 種子 (Japanese, polypeptide, Gene Expression, Plant Sprouts, Embryos, Expression Signatures, Protein, Gene Expression Signatures, shelf, Arabidopsis thaliana (thale cress), 根 (Japanese, Gene Expression Signature, Seed, anatomical spaces, scales, Expression Profile, flange, organ process, Transcriptome Profiles, thale cress, mouse-ear cress, Embryo, Seeds, Wall, lumen space, Sprouts, scale, Orbits, life, shelves, Plant, thaliana, Plant Zygote, root, Understanding, Mouse-ear Cresses, Plant Embryos, projection, ridge, hoja (Spanish, 葉 (Japanese, Protein Gene Products, process, processes, Gene 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(narrow)"],"view_count":["47"],"citation_count":["0"],"search_count":["5"],"full_dataset_link":["http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320014288"],"search_domains":["patentfamilies~0","rfam~0","merops~0","complex-portal~0","uniprot~0","wormbaseparasite~0","embl-covid19~0","reactome~0","emdb~0","wgs_masters~0","ebiweb_resources~0","opentargets_genetics~0","biomodels_all~0","ipd-mhc~0","ebiweb_teams~0","taxonomy~0","genome_assembly~0","sc-experiments~0","ebiweb_people~0","enzymeportal_enzymes~0","ipd-nhkir~0","cellosaurus~0","pdbe~0","chebi~0","patentproteins~0","interpro7~0","uniref~0","chembl~0","pdbekb~0","gpcrdb~0","hgnc~0","sc-genes~0","intact~0","rhea~0","ebiweb_training~0","alphafold~0","imgt-hla~0","patentnucleotides~0","ensemblroot~0","eva_studies~0","non-coding~0","europepmc~0","pubmed~1","identifiers_registry~0","pdbechem~0","hpa-covid19~0","eva-variants-covid19~0","biosamples~0","gwas_catalog~0","biotools~0","tls_masters~0","mesh~0","coding~0","sra~0","opentargets~0","efo~0","embl-pathogen~0","project~0","pride~1","human_diseases~0","geo_datasets~0","embl~0","treefam~0","uniparc~0","ols~0","dgva~0","intenz~0","go~0","tsa_masters~0","biosamples-covid19~0","ebiweb_corporate~0","omim~0","lrg~0","earlycause-molecular-sequences~0","ipd-kir~0","empiar~0","rnacentral~0","orcid_data_claims~0","gpmdb~2","lineage-covid19~0","metagenomics~0","pfam~0","pride 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File: Space_iTRAQ3.mzml. Published as part of Astrobiology. 2015 Jan;15(1):32-56  .","dates":{"submission":"2015-03-24"},"accession":"GPM32320014288","cross_references":{"pubmed":["25517942"],"Pride":["PXD001179"],"pride":[],"Pride Archive":["PXD001179"]}}