GPMDB00175OtherFeng S, et al.InstrumentNot AvailableNot availablePsychroflexus_torquis26179671john.bowman@utas.edu.auFood Safety Centre, Tasmanian Institute of Agriculture, University of Tasmaniahttp://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016917http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016910http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016877http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016876http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016879http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016912http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016911http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016878http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016914http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016913http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016916http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016915http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016871http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016870http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016873http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016872http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016875http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016874http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016888http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016887http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016846http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016889http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016848http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016847http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016849http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016880http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016882http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016881http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016884http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016883http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016886http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016885http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016899http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016855http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016854http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016898http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016857http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016856http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016859http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016891http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016890http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016893http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016892http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016851http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016895http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016894http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016850http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016897http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016853http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016852http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016896http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016907http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016906http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016909http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016908http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016866http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016865http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016901http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016868http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016867http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016900http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016903http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016869http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016902http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016905http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016904http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016860http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016862http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016861http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016864http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016863Not availableGPMDBThe extremely psychrophilic proteorhodopsin-containing bacterial species Psychroflexus torquis is considered to be a model sea-ice microorganism, which has adapted to an epiphytic lifestyle. So far, not much is known about proteorhodopsin-based phototrophy and associated life strategies of sea ice bacteria, although it has been previously shown that P. torquis can gain growth advantage from light using a proteorhodopsin proton pump, the activity of which is influenced by environmental salinity. The comprehensive quantitative proteomic study performed here indicated that P. torquis responds to changing salinity and illumination conditions. Proteins in the electron-transfer chain were down-regulated at a suboptimal salinity level, TonB-dependent transporters increased in abundance under supra-optimal salinity and decreased under suboptimal salinity. In addition, several anaplerotic CO2 fixation proteins and three putative light sensing proteins that contain PAS and GAF domains became more abundant under illumination. Furthermore, central metabolic pathways (TCA and glycolysis) were also induced by both salinity stress and illumination. The data suggest that P. torquis responded to changes in both light energy and salinity to modulate membrane and central metabolic proteins that are involved in energy production as well as nutrient uptake and gliding motility processes that would be especially advantageous during the polar summer ice algal bloom.Proteomic Insight into Functional Changes of Proteorhodopsin-Containing Bacterial Species Psychroflexus torquis under Different Illumination and Salinity Levels.Feng Shi S,Powell Shane M SM,Wilson Richard R,Bowman John P JP,Feng Shi S, Powell Shane M SM, Wilson Richard R, Bowman John P JPspecies, Illumination.data, bacteria, lifespan, IL1BC, Radiation, Caspase-1 subunit p10, iCE, 3.6.3.10, CASP-1, number, Visible Light, Light, eubacteria, CE-2, D2L2AD, Gastric H(+)|K(+) ATPase subunit alpha, CD258, presence, Bacteria <prokaryote>, count in organism, hydrogen:potassium-exchanging ATPase complex, LIGHT, count, SEA, bact-, prokaryotes, Non-gastric H(+)|K(+) ATPase subunit alpha, light, proton pump, CES2A1, Il1bc, Visible Radiations, Radiations, study, Proton pump, hydrogen/potassium-exchanging ATPase complex, Visible Radiation, Eubacteria, SLC20A3, Bacteria <prokaryotes>, HVEML, growth pattern, entire lifespan, entire life cycle, not Bacteria Haeckel 1894, non-developmental growth, life, P45, PCE-2, Photoradiation, IL-1 beta-converting enzyme, Interleukin-1 beta-converting enzyme, Visible, Monera, IL-1BC, LTg, Interleukin-1 beta convertase, Photoradiations, Caspase-1 subunit p20, ICE, prokaryote, Prokaryotae, 3.4.22.36, p45, species, Procaryotae, TR2, quantitative, associated, Proteomes, Prokaryota, CTP, Illumination., presence or absence in organismspecies, Illumination.projections, lifespan, IL1BC, lamellae, CASP-1, number, Gene, Embden-Meyerhof, Visible Light, eubacteria, Illumination, Gastric H(+)|K(+) ATPase subunit alpha, Embden Meyerhof Parnas Pathway, presence, supernumerary, process of organ, protrusion, lamella, hydrogen:potassium-exchanging ATPase complex, reduced, subnumerary, SEA, Gene Products, Embden-Meyerhof Pathway, light, proton pump, Il1bc, present in fewer numbers in organism, study, increased, pre-autophagosomal structure, hydrogen/potassium-exchanging ATPase complex, Eubacteria, Bacteria <prokaryotes>, entire lifespan, entire life cycle, IL-1BC., PCE-2, SYNS3, Pathways, proteins, ridges, Visible, decreased number, Monera, IL-1BC, Fast, ch, HBGF-9, decreased, Caspase-1 subunit p20, ICE, Prokaryotae, papilla, species, Procaryotae, TR2, associated, laminae, modifed Embden-Meyerhof pathway, Electrons, Positron, PAS, membrane, bacteria, data, Pathway, Radiation, anatomical protrusion, Caspase-1 subunit p10, Embden Meyerhof Pathway, iCE, 3.6.3.10, anatomical process, Negatron, Proteins, lamina, anaerobic glycolysis, flanges, Negatrons, Light, Positrons, CE-2, membranous organ component, D2L2AD, Embden-Meyerhof-Parnas, CD258, polypeptide, Glia-activating factor, Embden-Meyerhof-Parnas Pathway, Bacteria <prokaryote>, count in organism, LIGHT, count, perivacuolar space, GAF, Protein, bact-, Fast Electron, shelf, prokaryotes, Non-gastric H(+)|K(+) ATPase subunit alpha, CES2A1, Fast Electrons, HBFG-9, flange, organ process, Visible Radiations, Radiations, Proton pump, Visible Radiation, membrane of organ, SLC20A3, HVEML, growth pattern, not Bacteria Haeckel 1894, non-developmental growth, increased number, life, shelves, P45, Photoradiation, IL-1 beta-converting enzyme, Electron, Interleukin-1 beta-converting enzyme, Embden-Meyerhof-Parnas pathway, projection, ridge, Heparin-binding growth factor 9, Embden-Meyerhof pathway, LTg, Interleukin-1 beta convertase, Protein Gene Products, Gene Proteins, present in greater numbers in organism, process, processes, Photoradiations, glycolysis, FGF-9, spine, prokaryote, 3.4.22.36, p45, processus, quantitative, Embden-Meyerhof Pathways, Prokaryota, accessory, CTP, presence or absence in organism1705http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32320016914dbgap_ncbi~0patentfamilies~0rfam~0merops~0complex-portal~0uniprot~0wormbaseparasite~0embl-covid19~0reactome~0emdb~0wgs_masters~0ebiweb_resources~0opentargets_genetics~0biomodels_all~0ipd-mhc~0ebiweb_teams~0taxonomy~0genome_assembly~0sc-experiments~0ebiweb_people~0enzymeportal_enzymes~0ipd-nhkir~0cellosaurus~0pdbe~0chebi~0patentproteins~0interpro7~0uniref~0chembl~0pdbekb~0gpcrdb~0hgnc~0sc-genes~0intact~0rhea~0ebiweb_training~0alphafold~0imgt-hla~0patentnucleotides~0ensemblroot~0eva_studies~0non-coding~0europepmc~0pubmed~1identifiers_registry~0pdbechem~0hpa-covid19~0eva-variants-covid19~0biosamples~0gwas_catalog~0biotools~0tls_masters~0mesh~0coding~0sra~0opentargets~0efo~0embl-pathogen~0project~0pride~1human_diseases~0geo_datasets~0embl~0treefam~0uniparc~0ols~0dgva~0intenz~0go~0tsa_masters~0biosamples-covid19~0ebiweb_corporate~0omim~0lrg~0earlycause-molecular-sequences~0ipd-kir~0empiar~0rnacentral~0orcid_data_claims~0gpmdb~2lineage-covid19~0metagenomics~0pfam~0pride archive~1varsite~00Resource Reanalysis0.00.00.0052436767427513880.01.0falseProteomic Insight into functional changes of proteorhodopsin-containing bacterial species Psychroflexus torquis under different illumination and salinity levels.Data from ProteomeXchange, PXD ID: PXD000673. File: 70Lb1.mzXML. Published as part of J Proteome Res. 2015 Jul 16 . From the Abstract: {{i}} The extremely psychrophilic proteorhodopsin-containing bacterial species Psychroflexus torquis is considered a model sea-ice microorganism, which has adapted to an epiphytic lifestyle. So far not much is known about proteorhodopsin-based phototrophy and associated life strategies of sea ice bacteria although it has been previously shown that P. torquis can gain growth advantage from light using a proteorhodopsin proton pump the activity of which is influenced by environmental salinity. The comprehensive quantitative proteomic study performed here indicated that P. torquis responds to changing salinity and illumination conditions ... {{/i}}2015-07-24GPM3232001691426179671PXD000673PXD000673