{"database":"iProX","file_versions":[],"scores":null,"additional":{"omics_type":["Proteomics"],"submitter":["Dandan Guo"],"species":["Scutellaria Baicalensis"],"full_dataset_link":["http://www.iprox.org/page/project.html?id=IPX0006282000"],"submitter_email":["dana_guo0826@163.com"],"submitter_affiliation":["Second Military Medical University"],"sample_protocol":[""],"repository":["iProX"],"data_protocol":[""],"pubmed_abstract":["<i>Scutellaria baicalensis</i> Georgi, also known as huang-qin in traditional Chinese medicine, is a widely used herbal remedy due to its anticancer, antivirus, and hepatoprotective properties. The <i>S. baicalensis</i> genome was sequenced many years ago; by contrast, the proteome as the executer of most biological processes of <i>S. baicalensis</i> in the aerial parts, as well as the secondary structure of the roots (xylem, phloem, and periderm), is far less comprehensively characterized. Here we attempt to depict the molecular landscape of the non-model plant <i>S. baicalensis</i> through a multi-omics approach, with the goal of constructing a highly informative and valuable reference dataset. Furthermore, we provide an in-depth characterization dissection to explain the two distinct flavonoid biosynthesis pathways that exist in the aerial parts and root, at the protein and phosphorylated protein levels. Our study provides detailed spatial proteomic and phosphoproteomic information in the context of secondary structures, with implications for the molecular profiling of secondary metabolite biosynthesis in non-model medicinal plants."],"pubmed_title":["Multi-omics landscape to decrypt the distinct flavonoid biosynthesis of <i>Scutellaria baicalensis</i> across multiple tissues."],"pubmed_authors":["Guo Dandan D, Zhu Zhenyu Z, Wang Zhe Z, Feng Fei F, Cao Qi Q, Xia Zhewei Z, Jia Xinlei X, Lv Diya D, Han Ting T, Chen Xiaofei X"],"name_synonyms":["Skullcap, Baikal, Huang Qin, Baikal skullcap., Baikal Skullcap, Scutellariae radix, Huangqin"],"pubmed_abstract_synonyms":["Panomics, eIF2C2, l(2)k08121, Pflanze, protein, Scutellariae radix, l(2)04845, GRO:0005338, epidermis epithelial layer, DmelCG6383, viridiplantae, Herbs, Healing Plant., flavonoid formation, Biological Processes, Biological Phenomenon, Medicinal Plants, exact), Medicinal Herb, Biological, Herb, CG7439, Tongue Diagnoses, Pharmaceutical Plant, protein aggregate, Phenomenon, Genomes, FKH2, crumb, Chinese Medicine, FBW6, FOXG1B, l(2)4845, FBW7, FOXG1A, Fbw7, FOXG1C, ago2, ago1, climbing root (narrow), Pharmaceutical, BF1, Tongue Assessment, CDC4, Cdc4, BF2, Chung I, Fbx30, Dm Ago1, Ago2, Ago1, Traditional, Healing, cdc4, Dissections, DmelCG7439, Xylems, Traditional Medicine, ago1-1, Data Set, Dm Ago2, Process, CG6383, Medicinal Herbs, DmFbw7, DmelCG15010, anon-WO0257455.29, aerial root (narrow), Traditional Tongue Diagnoses, Fbwd6, periderm, Fbxw6, AG02, Biological Process, Tongue Diagnosis, CG13452, Phloems, Biologic Phenomena, Multi Omics, Zhong Yi Xue, Plant, Integrative, enveloping layer, whole genome, root, Hsueh, HFK2, metastatic, HFK1, Healing Plants, HFK3, Ago, AGO, Traditional Chinese Medicine, flavonoid synthesis, secondary metabolite biosynthesis, Huangqin, Proteomes, l(3)S050920, DmelCG6671, Crbs, SEL-10, hCdc4, HBF2, ago, 1110001A17Rik, conformation, FHKL3, Processes, AGO 2, Goal, Gene, Pharmaceutical Plants, flavonoid anabolism, far, Traditional Tongue Assessment, protein-containing complex, MRE20, FBXW3, Multi-Omics, FBXW6, xilema (Spanish, HBF-2, HBF-1, HBF-3, Crumbs, Plants, 木質部 (Japanese, Gene Products, HBF-G2, FKHL2, FKHL1, FKHL4, QIN, FKHL3, Traditional Tongue Diagnosis, floema (Spanish, plantae, epitrichium, study, CT19912, 0509/20, 1384/04, dAGO2, dAGO1, Omics, Fbxo30, SEL10, dAgo1, dAgo2, portion of phloem tissue (exact), FBXO30, Traditional Tongue Assessments, Skullcap, Pan-Omics, skin periderm, Chinese, flavonoid biosynthesis, Biologic, l(3)j1B5, FBX30, Baikal, Integrative-Omics, Ago-1, Ago-2, protein complex, Proteins, anon-WO0118547.345, total expressed protein, 師部、師管 (Japanese, Integrative Omics, KHL2, l(3)07207, all, CG6671, native protein, Medicinal Plant, Protein, Phenomena, Multi-Omic, hAgo, Pan Omics, CRB, Crb, Baikal Skullcap, l(3)S058104, l(2)k00208, EVL, Baikal skullcap, portion of phloem tissue, epidermis outer layer, portion of xylem tissue (exact), phosphorylated protein, Protein Gene Products, Gene Proteins, Chinese Traditional Medicine, ago-2, SCF[Ago], portion of xylem tissue, CG15010, Herbals, Prot/PhosRes+, Huang Qin, Chung I Hsueh, Medicinal"],"pubmed_title_synonyms":["Panomics, Multi-Omics, Multi Omics, flavonoid formation, Baikal, Integrative-Omics, Tissue., Multi-Omic, Pan Omics, Integrative, Skullcap, Pan-Omics, flavonoid anabolism, Huang Qin, Omics, flavonoid synthesis, Baikal Skullcap, Integrative Omics, flavonoid biosynthesis, Scutellariae radix, Huangqin, Baikal skullcap"],"description_synonyms":["Protein Gene Products, Gene Products, Proteins, Gene Proteins, Gene, assay, Phosphopeptide, Data Base., determination, Protein, chemical analysis"],"additional_accession":[]},"is_claimable":false,"name":"Phosphoroteome of Scutellaria baicalensis","description":"3289 phosphopeptides were identified and mapped to 1472 proteins that are comparable by phosphoproteomics analysis and annotated in COG/KOG, Domain, KEGG and GO database, respectively","dates":{"publication":"Tue Apr 18 00:00:00 GMT+01:00 2023"},"accession":"PXD041603","cross_references":{"TAXONOMY":["65409"],"pubmed":["38298899"]}}