{"database":"iProX","file_versions":[],"scores":null,"additional":{"omics_type":["Proteomics"],"submitter":["Zhen Chen"],"species":["Oryza Sativa"],"full_dataset_link":["http://www.iprox.org/page/project.html?id=IPX0017077000"],"submitter_email":["chenzhen-win2009@163.com"],"submitter_affiliation":["Henan Agricultural University"],"sample_protocol":[""],"repository":["iProX"],"data_protocol":[""],"additional_accession":[]},"is_claimable":false,"name":"PlantPTM Accurate prediction of diverse PTM sites in plant with multi-view deep learning and protein language models","description":"This dataset contains integrated mass spectrometry-based profiling of N-glycosylation, lysine acetylation, and lysine ubiquitylation in rice samples. N-glycosylated peptides were enriched using lectin affinity enrichment followed by PNGase F deglycosylation in H2(18)O and analyzed using timsTOF Pro in PASEF mode. Acetylated and ubiquitinated peptides were enriched using PTM-specific antibody affinity enrichment and analyzed using Orbitrap Astral in DIA mode. The dataset was generated to support PTM characterization and PlantPTM-related analyses in plants.","dates":{"publication":"Sat May 09 00:00:00 GMT+01:00 2026"},"accession":"PXD078192","cross_references":{"TAXONOMY":["4530"]}}