{"database":"iProX","file_versions":[],"scores":null,"additional":{"omics_type":["Proteomics"],"submitter":["Cheng Chang"],"species":["Homo Sapiens","Mus Musculus"],"full_dataset_link":["http://www.iprox.org/page/project.html?id=IPX0018169000"],"submitter_email":["changcheng@ncpsb.org.cn"],"submitter_affiliation":["National Center for Protein Sciences (Beijing)"],"sample_protocol":[""],"repository":["iProX"],"data_protocol":[""],"additional_accession":[]},"is_claimable":false,"name":"timsTOF DDA Dataset for Article “False discovery rate control enables trustworthy AI-based de novo peptide sequencing”","description":"This project contains an in-house timsTOF DDA proteomics dataset used in the study \"False discovery rate control enables trustworthy AI-based de novo peptide sequencing\". The dataset includes 100 HEK293T samples and 100 mouse tissue samples acquired for routine quality control on a timsTOF mass spectrometer. Human and mouse samples were searched with PEAKS Online version 12 and identifications were filtered at 1% FDR, yielding 32,018,308 PSMs. Carbamidomethylation of cysteine was used as a fixed modification and oxidation of methionine was used as a variable modification.","dates":{"publication":"Mon Jul 06 00:00:00 GMT+01:00 2026"},"accession":"PXD080632","cross_references":{"TAXONOMY":["10090","9606"]}}