<HashMap><database>JPOST Repository</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Raw>https://storage.jpostdb.org/JPST001076/files/111_Maruhashi_3_V20A_M2_IP_QEp.raw</Raw><Raw>https://storage.jpostdb.org/JPST001076/files/113_Maruhashi_4_L14Q_V20A_M2_IP_QEp.raw</Raw><Raw>https://storage.jpostdb.org/JPST001076/files/109_Maruhashi_2_WT_M2_IP_QEp.raw</Raw><Other>https://storage.jpostdb.org/JPST001076/files/200901_Maruhashi_medium_M2_IP_QEp.pdResult</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Proteomics</omics_type><submitter>Hidetaka Kosako</submitter><species>Homo Sapiens (human)</species><full_dataset_link>https://repository.jpostdb.org/entry/JPST001076</full_dataset_link><submitter_affiliation>Tokushima University</submitter_affiliation><sample_protocol></sample_protocol><repository>jPOST</repository><data_protocol></data_protocol><pubmed_abstract>Lymphocyte activation gene-3 (LAG-3) is a potent inhibitory co-receptor; yet, its functional ligand remains elusive, with distinct potential ligands identified. Here, we investigated the relative contribution of potential ligands, stable peptide-MHC class II complexes (pMHCII) and fibrinogen-like protein 1 (FGL1), to LAG-3 activity in vitro and in vivo. Binding of LAG-3 to stable pMHCII but not to FGL1 induced T cell suppression in vitro. Consistently, LAG-3 mutants lacking FGL1-binding capacity but not those lacking stable pMHCII-binding capacity retained suppressive activity in vitro. Accordingly, targeted disruption of stable pMHCII- but not FGL1-binding capacity of LAG-3 in NOD mice recapitulated diabetes exacerbation by LAG-3 deficiency. Additionally, the loss of stable pMHCII-binding capacity of LAG-3 augmented anti-cancer immunity comparably with LAG-3 deficiency in C57BL/6 mice. These results identify stable pMHCII as a functional ligand of LAG-3 both in autoimmunity and anti-cancer immunity. Thus, stable pMHCII-LAG-3 interaction is a potential therapeutic target in human diseases.</pubmed_abstract><pubmed_title>Binding of LAG-3 to stable peptide-MHC class II limits T cell function and suppresses autoimmunity and anti-cancer immunity.</pubmed_title><pubmed_authors>Maruhashi Takumi T, Sugiura Daisuke D, Okazaki Il-Mi IM, Shimizu Kenji K, Maeda Takeo K TK, Ikubo Jun J, Yoshikawa Harunori H, Maenaka Katsumi K, Ishimaru Naozumi N, Kosako Hidetaka H, Takemoto Tatsuya T, Okazaki Taku T</pubmed_authors><pubmed_abstract_synonyms>Modb1, PP17, Ifm(2)RU1, Dm II, MHC, Activity, DnMod, Laboratory, Blast, PP19, Stp, Mus domesticus, Lymphoblast Transformation, Autoimmunities, Bsh, CASP-14, protein, Tumor, gene5, House Mouse, QA1, peptide, Myo, dmTAF[[II]]230, Polypeptides, B37, peptido, mhc, diseases, fibrinogen gamma chain, ifm(2)2, Alleviating interaction, diseases and disorders, autoimmunity, 1110025J15Rik, protein aggregate, Leprb, DmelCG4190, HSP67, Hspg3, Autoimmune condition, C1orf215, FBgn0002741, DM - Diabetes mellitus, CG17927, LFIRE1, Autoimmune Response, fibrinogen, Immune Processes, Immune Responses, human disease, Man (Taxonomy), peptides, mMHC, TFIID TAF250, Autoimmune disease, Myo2, cel, l(2)M66, LFIRE-1, ataxia, DROMHC, Swiss Mice, DmelCG7693, 4624, Pp17, Pp18, NMMII, gene3, ifm(2)RU2, Diabetes mellitus, Immune, malignant neoplasm, gene 3, Pp19, NMM, dentatorubral pallidoluysian atrophy, HLA-6.2, EA1.2, Homo sapiens disease, Malignancies, P18, l(3)07551, l(2)k10423, P19, Mhc36B, Myo II, l(2)36Ae, db, Tumors, sMHC, and dementia, Ligand, dTAF[[II]]230, Coagulation, HRS, DM, Process, Modern, CASP14, mouse, TAF200, Mhc-c[1], RCB2758, ifm(2)RU1, TAFII-250, seizures, TAF250/230, myoII, results, Sht, OB-RGRP, NOD, Nod, TAFII250, fibrinogen alpha chain, Benign, DmNod, KIF22, Mini-ICE, LAP18, Diseases, EA2.1, NOS, hsp67B, Lap18, dOSR1, Mus musculus, Lymphocyte Stimulation, Stimulation, Caspase-14 subunit p10, CG7693, mice, Swiss Mouse, Benign Neoplasms, Caspase-14 subunit p19, small hsp locus 67B, Blood Coagulation Factor I, CG17603, MICE, TAF[[II]], human, Obr, domesticus, Diabetes NOS, Malignant Neoplasms, loss of, gamma-Fibrinogen, disease, Taf250, SR3-5, CG4190, medical condition., Mouse, Polypeptide, MyoII, obl, TAF230, gene-3, Zip, ZIP, Autoimmune Responses, 3.4.22.-, other disease, d230, human being, Blastogenesis, Neoplasms, Blast Transformation, Benign Neoplasm, Gene, dTAFII250, mini-ICE, Myo-II HC, l(1)TW6, protein-containing complex, EfW1, Malignant, Human, DmelCG1763, Dm nmII, Homo sapiens, dmTAF1, House, Taf230, Gene Products, Diabetes mellitus (disorder), HP-041, Mus musculus domesticus, disease or disorder, gamma Fibrinogen, SMN, Smn, Mice, Man, CG15792, TAF250, D12S755E, 19k, Taf200, Naito Oyanagi disease, dTAF[[II]]250, Activation, MRP, Mrp, Malignancy, Myo-II, Ifm(2)2, cell, Swiss, dSTRAD, ligand, zip/MyoII, DmMHC, obese-like, Taf1p, Coagulation Factor I, suppressive genetic interaction (sensu inequality), DmelCG17927, non-neoplastic, Neoplasias, dTAF250, Immune Response, Nup, Pig, disorder, Lag, LAG, peptidos, DmnmII, TAF, chorea, Immune Process, Diabetes, Lymphocyte, diabetes, l(2)02957, Cancer, Autoimmunity, Transformation, Autoimmune disorder, TAF[[II]]250, HSPB8, Malignant Neoplasm, Lymphoblast, protein complex, Factor I, DroMII, HFREP1, Proteins, Hsp-G3, disorders, lag, DRPLA, CG1763, l(3)84Ab, E(br), BG:DS00004.13, Peptide, Cell, dTAF230, diabetes mellitus (disease), fibrinogen beta chain, polypeptide, Hsp67BC, MT, native protein, nmMHC, Fibrinogens, Mus, p230, Protein, Neoplasm, TAF[[II]]250/230, TFIID, condition, Mhc-c, STE20-like/SPAK, myoclonic epilepsy with choreoathetosis, DmelCG15792, Taf[[II]]250, LEPROT, Pr22, primary cancer, TAF[[II]]230, distinct, diabetes mellitus, Op18, Non-obese Diabetic, House Mice, TAF[II]250, Cancers, malignant tumor, Laboratory Mice, Protein Gene Products, Gene Proteins, MyHC, HSP67Bc, DmelCG17603, PR22, OP18, Modern Man, Response, Dronm-MII, anon-WO0140519.37, Lymphocyte Transformation, Peptid, General activity, Laboratory Mouse, Neoplasia, zpr, Dm-HSP67Bc, nmy-2, TAF1</pubmed_abstract_synonyms><name_synonyms>liquid chromatography tandem mass spectroscopy, LC-MS2, PP17, determination, PP19, Proteins, LC-MS/MS, lag, Gene, RCB2758, LC-MS-MS, Mutations, Avazyme, LC/MS/MS, Protein, LC-MSMS, LAP18, Gene Products, SMN, Smn, 1110025J15Rik, STE20-like/SPAK, C1orf215, Lap18, dOSR1, 19k, Pr22, LCMSMS, CG7693, Op18, dSTRAD, Alpha-Chymotrypsin Choay, chemical analysis., DmelCG7693, Alphacutanée, 4624, Protein Gene Products, Pp17, Pp18, Gene Proteins, PR22, liquid chromatography-tandem mass spectroscopy, OP18, Pp19, Pig, liquid chromatography tandem mass spectrometry, Lag, LAG, assay, P18, l(3)07551, P19</name_synonyms><description_synonyms>liquid chromatography tandem mass spectroscopy, l(1)d norm-12, PP17, Bru, BG:DS00941.4, EG:17A9.1, Raw, CG7793, determination, BR_C, PP19, Aminosaeure, 2Bc, l(2)Sos, protein, BR-C, nodus primitivus., Alkylations, Mutations, Polypeptides, Background, L-Isomer Methionine, Methionine, peptido, l(1)2Bad, A18, br-C, l(1)2Bab, dorsal marginal zone, T-PA, br-Z1, Cultural, br-Z3, PP1, PP2, 1110025J15Rik, protein aggregate, BR-c, Br-C, l(1)dn1, E(sev)2A, WMS, C1orf215, Svc, Br-Z4, rbp, AU020998, ethnicity, LCMSMS, amino acids, peptides, l(1)G0318, de12, E(var)189, M, BR, l(1)n34, BrC-Z1, DmelCG7693, 4624, Br-C-Z3, Pp17, Pp18, HUMRPL29, ppm, Pp19, Br, BRC-Z2, BRC-Z3, BRC-Z1, P18, BRC-Z4, Half Cystine, l(3)07551, P19, GPHYSD2, Racemethionine, CG11491, SGS, rdp, LC-MS2, rds, Zinc Cysteinate, Aminokarbonsaeure, BR-C Z1, l(1)d.norm.1, acetylation, LC-MS/MS, 2-Amino-4-(methylthio)butyric acid, RCB2758, L27', Search, l(1)npr-1, DmelCG7793, uq, predicted, l(1)npr1, ACMICD, Avazyme, Cultural Background, soluble, Cultures, LAP18, dme-SOS, Henson's node, Methionin, nrp1, Hmet, br24, dSos, br25, Lap18, parent ion, dOSR1, Amino Acid, Acid, D8Ertd2e, Cultural Beliefs, CG7693, 34Ea, RPL29_3_370, npr-1, L-Cysteine, MASS, nanospray, precursor ion, liquid chromatography-tandem mass spectroscopy, Biocatalyst, DMZ, npr, l(1)pp-2, l(1)pp-1, L27A, Acids, Polypeptide, Liquimeth, AW212668, Cysteine Hydrochloride, 2-amino-4-(methylsulfanyl)butanoic acid, Biocatalysts, l(1)G0018, DmelCG11491, Aminocarbonsaeure, L Isomer, l(1)ts144, FBN, Gene, l(1)2Ba, l(1)2Bb, Z1, l(1)2Bc, Z2, EK2-8, precursor, Z3, Z4, protein-containing complex, LC-MS-MS, CG11511, RPL29P10, EG:25D2.1, CG11514, ECTOL1, nrp, LC-MSMS, Br-C Z2, Gene Products, l(1)ts132, L-Methionine, l(1)ts376, SMN, Smn, Del(8)44H, Half-Cystine, PATISS, l(2)br25, Pedameth, Backgrounds, l(2)br24, l(1)ESHS5, 19k, Search Engines, TPA, dSTRAD, L Cysteine, nprl, l(2)k06321, Acetylations, Cultural Relativisms, OCTD, tPA, l(1)G0042, l(1)G0284, Enzyme, 2-amino-4-(methylthio)butanoic acid, l(1)2Bd, 10^[-6], stem node, HIP, Pig, Customs, npr1, Lag, LAG, peptidos, l(1)PP1, l(1)pp1, l(2)34Ea, culture, SOS, l(1)pp2, 2.3, metionina, EG:123F11.1, DL-Methionine, protein complex, Proteins, L29, lag, ecs, BrZ3, sos, Cultural Backgrounds, l(1)G0284a, L-Isomer, Cell, Peptide, Engine, LC/MS/MS, native protein, o.c.c., l(2)k05224, Protein, chemical analysis, MFS1, STE20-like/SPAK, Data Base, Sos1, WMS2, Met, Pr22, Col4a-1, nodal stem, Op18, l(1)ts358, EY2-3, Magnetic, Alpha-Chymotrypsin Choay, Episome, Amino, Alphacutanée, Protein Gene Products, Episomes, Gene Proteins, Su(tor)2-2, 2B5, PR22, l(1)G0401, OP18, SSKS, Plasmid, alpha-amino-gamma-methylmercaptobutyric acid, Relativisms, liquid chromatography tandem mass spectrometry, BRC, Peptid, assay, Relativism, variable, Cultural Relativism</description_synonyms><pubmed_title_synonyms>Zip, ZIP, Autoimmune Responses, PP17, Ifm(2)RU1, Dm II, MHC, PP19, Stp, Neoplasms, Autoimmunities, Benign Neoplasm, Myo-II HC, Bsh, Tumor, Malignant, QA1, peptide, Myo, Polypeptides, peptido, Dm nmII, mhc, ifm(2)2, autoimmunity, SMN, Smn, 1110025J15Rik, Immune., CG15792, Autoimmune condition, C1orf215, FBgn0002741, CG17927, 19k, Autoimmune Response, Immune Processes, Immune Responses, peptides, mMHC, Autoimmune disease, MRP, Mrp, Malignancy, Myo-II, Myo2, Ifm(2)2, dSTRAD, l(2)M66, ligand, zip/MyoII, DmMHC, DROMHC, DmelCG7693, 4624, DmelCG17927, Pp17, Pp18, NMMII, Neoplasias, ifm(2)RU2, Immune Response, Immune, Nup, malignant neoplasm, Pp19, Pig, NMM, HLA-6.2, Lag, LAG, peptidos, EA1.2, Malignancies, DmnmII, P18, l(3)07551, l(2)k10423, P19, Immune Process, Mhc36B, Myo II, l(2)02957, l(2)36Ae, Cancer, Tumors, sMHC, Autoimmunity, Autoimmune disorder, Malignant Neoplasm, Process, DroMII, lag, Mhc-c[1], RCB2758, E(br), ifm(2)RU1, myoII, Peptide, Sht, polypeptide, MT, Benign, nmMHC, LAP18, Neoplasm, Mhc-c, EA2.1, STE20-like/SPAK, Lap18, DmelCG15792, dOSR1, Pr22, primary cancer, CG7693, Op18, Benign Neoplasms, Cancers, malignant tumor, Malignant Neoplasms, MyHC, PR22, OP18, Response, Dronm-MII, anon-WO0140519.37, Peptid, Polypeptide, MyoII, Neoplasia, zpr, nmy-2</pubmed_title_synonyms></additional><is_claimable>false</is_claimable><name>Mature proteins of LAG-3 with or without mutations were digested with chymotrypsin followed by data-dependent LC-MS/MS analysis</name><description>The FLAG-tagged soluble monomeric proteins of LAG-3-WT, LAG-3-V20A, and LAG-3-L14Q/V20A were immunoprecipitated from culture supernatants of Plat-E cells transfected with the corresponding plasmid vectors using ANTI-FLAG M2 Magnetic Beads. Proteins on the beads were digested with chymotrypsin (Roche) followed by reduction and alkylation. The peptides were subjected to data-dependent LC-MS/MS analysis using an EASY-nLC 1200 UHPLC connected to a Q Exactive Plus mass spectrometer through a nanoelectrospray ion source (Thermo Fisher Scientific). Raw data were directly analyzed against the SwissProt database restricted to H. sapiens supplemented with predicted amino acid sequences of LAG-3 with or without mutations starting from A18 to L29 using Proteome Discoverer version 2.3 (Thermo Fisher Scientific) with Sequest HT search engine. The search parameters were as follows: (a) chymotrypsin as an enzyme with up to two missed cleavages; (b) precursor mass tolerance of 10 ppm; (c) fragment mass tolerance of 0.02 Da; (d) carbamidomethylation of cysteine as a fixed modification; and (e) acetylation of protein N-terminus and oxidation of methionine as variable modifications. Peptides were filtered at a false discovery rate of 1% using the percolator node.</description><dates><publication>Mon Apr 11 00:00:00 BST 2022</publication></dates><accession>PXD023929</accession><cross_references><TAXONOMY>9606</TAXONOMY><pubmed>35413245</pubmed></cross_references></HashMap>