<HashMap><database>JPOST Repository</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Xlsx>https://storage.jpostdb.org/JPST002027/files/Breast%20Cancer_578_glycopeptide_Byonic_Quan.xlsx</Xlsx><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Normal_578Bst_membrane_glycopeptide_1.raw</Raw><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Normal_578Bst_membrane_glycopeptide_2.raw</Raw><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Normal_578Bst_membrane_glycopeptide_3.raw</Raw><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Cancer_578T_membrane_glycopeptide_2.raw</Raw><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Cancer_578T_membrane_glycopeptide_1.raw</Raw><Raw>https://storage.jpostdb.org/JPST002027/files/Breast%20Cancer_578T_membrane_glycopeptide_3.raw</Raw></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Proteomics</omics_type><submitter>Daisuke Takakura</submitter><species>Homo Sapiens (human)</species><full_dataset_link>https://repository.jpostdb.org/entry/JPST002027</full_dataset_link><submitter_affiliation>Yokohama City University</submitter_affiliation><sample_protocol></sample_protocol><repository>jPOST</repository><data_protocol></data_protocol><pubmed_abstract>Aberrant glycosylation of membrane proteins is a hallmark of cancer and a useful molecular marker for the diagnosis of breast cancer (BC). However, the molecular mechanisms by which altered glycosylation affects the malignant transformations associated with BC are poorly understood. Accordingly, we performed comparative membrane &lt;i>N&lt;/i>-glycoproteomics using the human BC cell line pair, Hs578T, and its syngeneic normal cell line, Hs578Bst. A total of 359 &lt;i>N&lt;/i>-glycoforms derived from 113 proteins were identified in both cell lines, of which 27 were found only in Hs578T cells. Significant changes in &lt;i>N&lt;/i>-glycosylation were found in the lysosome-associated membrane protein 1 (LAMP1), the integrin family, and laminin. Confocal immunofluorescence microscopy images revealed the accumulation of lysosomes in the perinuclear space in cancer cells, which could be associated with marked changes in LAMP1 glycosylation, such as a decreased level of polylactosamine chains. Overall, the alterations in glycosylation may be involved in changes in the adhesion and degradation of BC cells.</pubmed_abstract><pubmed_title>Comprehensive Membrane &lt;i>N&lt;/i>-Glycoproteomics Using Human Breast Cancer Cell Line Pairs.</pubmed_title><pubmed_authors>Takakura Daisuke D, Yoshida Haruka H, Ohashi Shoko S, Kawasaki Nana N</pubmed_authors><name_synonyms>average, Taf[[II]]250, Controlling, Taf200, dTAF[[II]]230, TAF[[II]]250, d230, preventive therapy, dTAF[[II]]250, TAF[[II]]230, reference sample, TFIID TAF250, cel, cell, prophylaxis, TAF200, l(3)84Ab, dTAFII250, Taf1p, TAF[II]250, BG:DS00004.13, TAFII-250, CG17603, TAF250/230, TAF[[II]], EfW1, Cell, prevention, dTAF230, preventive measures, dTAF250, dmTAF[[II]]230, TAFII250, DmelCG17603, TAF1., Taf250, control, dmTAF1, SR3-5, Taf230, p230, TAF[[II]]250/230, TFIID, TAF, prevention and control, TAF230, Controlled, TAF250</name_synonyms><pubmed_abstract_synonyms>biochemical pathways, Integral Membrane Proteins, Networks, malignant tumor of the breast, Antemortem Diagnosis, O-linked Glycosylations, Kinship, alphaPS2, Galactosylation, Surface Proteins, mammary neoplasm, Galactosylations, LAMP-1, Human Mammary Neoplasms, Membrane-Associated Proteins, Autolysosome, Integral, Tumor, Diagnosis, dmTAF[[II]]230, Membrane Tissues, Light Microscopy, "neoplasm of breast (disorder)" EXACT [SNOMEDCT_2005_07_31:126926005], symptoms, Line, Life Cycle, cellular degradation, cancer of the breast, alpha2Int, Laminin M, present in fewer numbers in organism, Family Life Cycle, BC, Mammary Neoplasms, malignant neoplasm of breast, Man (Taxonomy), Kinship Network, 2-amino-2-deoxy-4-O-beta-D-galactopyranosyl-, TFIID TAF250, cel, catabolism, Moods, Surface, Simple, membrane region, Tissue, Human Mammary Carcinomas, N-Acetylglucosaminylation, Hand-Held Microscopy, Sialylation, DmelCG9623, decreased, LGP120, malignant neoplasm, cancer of breast, O-linked, Hand-Held, Surface Protein, Membrane Associated Proteins, biotransformation, Malignancies, Family Life Cycles, mammary cancer, Membrane Protein, Breast Malignant Neoplasms, N-Acetylglucosaminylations, Diagnose, Tumors, screening, Membrane Tissue, Carcinoma, dTAF[[II]]230, "breast neoplasm" EXACT [MTH:120], aberrant, PS2, Modern, perinuclear space, TAF200, integral to membrane, Laminin, Glycosylations, Light, TAFII-250, TAF250/230, Optical Microscopy, Fucosylations, Autolysosomes, Diagnoses, P2B, aPS2, CT27194, TAFII250, Lamp-1, Benign, Postmortem, Screenings, Phosphoglycosylations, Examinations and Diagnoses, NOS, secretion, M Chain, Postmortem Diagnosis, Filiation, Malignant Neoplasm of Breast, Lines, Carcinomas, Diagnoses and Examination, D-Glucose, Cell Membrane Protein, Postmortem Diagnoses, 120 kDa lysosomal membrane glycoprotein, N linked Glycosylation, Membrane-Associated, Merosin, Sialylations, signs, Benign Neoplasms, CG9623, Cell Membrane Proteins, "mammary neoplasm" RELATED [], CG17603, TAF[[II]], human, Malignant Neoplasms, Hand Held Microscopy, Life Cycles, breast cancer, Taf250, N Acetylglucosaminylation, SR3-5, Breast Tumors, Breast Malignant Tumors, Laminin M Chain, Microscopy, PSalpha2, LGP-A, cancer, TAF230, Integral Membrane, atypia, primary breast cancer, d230, human being, Lysosome, Family Member, GlcNAcylation, Neoplasms, Benign Neoplasm, Integrin, Mammary Cancers, Gene, dTAFII250, Network, N-linked Glycosylations, Malignant, EfW1, cellular catabolism, Human, N-linked, Breast Malignant Tumor, LAMPA, in, O-linked Glycosylation, glycosylation, Homo sapiens, reduced, Glycosylation, dmTAF1, Breast Tumor, Taf230, subnumerary, Membrane-Associated Protein, integral component of membrane, Mass, Gene Products, Screening, "mammary tumor" EXACT [CSP2005:2016-0671], breast tumor, Mood, Cell., atypical, Antemortem, Man, If, TAF250, Cell Membrane, Chain, Taf200, Human Mammary, dTAF[[II]]250, alpha[[PS2]], Malignancy, Research, breakdown of chemical, Protein Glycosylations, Mammary Neoplasm, Tissues, cell, HS578T, Mammary Carcinoma, homopolymer, Taf1p, Diagnoses and Examinations, decreased number, integrin, Cancer of the Breast, Neoplasias, dTAF250, CD107a, Optical, LGP-120, alphaPS2C, Phosphoglycosylation, Malignant Tumor of Breast, Mammary, Mammary Cancer, region of membrane, PS 2, Glycoprotein GP-2, Kinship Networks, Fucosylation, Breast, TAF, Family, mammary tumor, N-linked Glycosylation, Cancer, Glycoprotein GP 2, Antemortem Diagnoses, cellular breakdown, Breast Carcinoma, Human Mammary Neoplasm, membrane, TAF[[II]]250, findings, Breast Carcinomas, Malignant Neoplasm, Family Research, Protein Glycosylation, degradation, Affects, Proteins, Cell Lines, Cell Surface, l(3)84Ab, Cell Surface Protein, defective, BG:DS00004.13, nuclear intermembrane space, "breast tumor" EXACT [NCI2004_11_17:C2910], Cell, Examination and Diagnoses, dTAF230, Breast Malignant Neoplasm, Family Members, O linked Glycosylation, AI196048, MT, Mammary Carcinomas, Mass Screenings, p230, Simple Microscopy, Protein, Membrane Proteins, Neoplasm, whole membrane, TAF[[II]]250/230, GlcNAcylations, Human Mammary Carcinoma, TFIID, Lysosomal membrane glycoprotein A, Cell Surface Proteins, Membrane Associated Protein, breakdown of molecule, Taf[[II]]250, primary cancer, Breast Neoplasm, transmembrane, TAF[[II]]230, biodegradation, Hs 578T, Compound Microscopy, CD107 antigen-like family member A, TAF[II]250, Cancers, Membrane, Lysosome-associated membrane protein 1, malignant tumor, Protein Gene Products, inf, Gene Proteins, breakdown of substance, Integral Membrane Protein, DmelCG17603, Compound, nuclear membrane lumen, Families, Breast Cancer, Modern Man, PS2alpha, alpha[[PS2(ms8)]], Cancer of Breast, Relatives, Neoplasia, breast, TAF1</pubmed_abstract_synonyms><pubmed_title_synonyms>Human, Membrane Tissue, membrane, Membrane Tissues, transmembrane, human being, Man (Taxonomy), Homo sapiens, Tissues, integral component of membrane, Modern Man, Modern, region of membrane, whole membrane, membrane region, Tissue, integral to membrane, Membrane, Man, breast carcinoma cell line., human</pubmed_title_synonyms><description_synonyms>Human, Membrane Tissue, HS578T., membrane, Membrane Tissues, transmembrane, human being, Man (Taxonomy), Homo sapiens, Hs 578T, Tissues, integral component of membrane, Modern Man, Modern, region of membrane, whole membrane, membrane region, Tissue, integral to membrane, Membrane, Man, breast carcinoma cell line, human</description_synonyms></additional><is_claimable>false</is_claimable><name>N-glycoproteomics on BC and normal control cell lines</name><description>Comprehensive membrane N-glycoproteomics using human breast cancer cell line pairs, Hs578T and Hs578Bst.</description><dates><publication>Fri Feb 16 00:00:00 GMT 2024</publication></dates><accession>PXD040130</accession><cross_references><TAXONOMY>9606</TAXONOMY><pubmed>37250596</pubmed></cross_references></HashMap>