Spectral data were processed and annotated according to previously published methods (Fuhrer et al., 2011). Missing values were imputed using a recursive approach in the raw data. Upon identification of consensus centroids across all samples, ions were putatively annotated by accurate mass and isotopic patterns. Starting from the HMDB v4.0 database, we generated a list of expected ions including deprotonated, fluorinated, and all major adducts found under these conditions. All formulas matching the measured mass within a mass tolerance of 0.001 Da were enumerated. As this method does not employ chromatographic separation or in-depth MS2 characterization, it is not possible to distinguish between compounds with identical molecular formula. The confidence of the annotation reflects Level 4.
"],"repository":["MetaboLights"],"study_status":["Public"],"ptm_modification":[""],"instrument_platform":["Flow injection analysis MS - negative"],"publication":["Paralleled Dynamics of Arabidopsis Root Exudation and SynCom Assembly in a Controlled Environment. 10.64898/2026.01.29.702624.","Glass bead-based microcosms enable simultaneous profiling of root exudate and microbiome dynamics. 10.1016/j.rhisph.2026.101363."],"submitter_affiliation":["PMI, University of Basel","University of Basel"],"submitter_name":["Jan Waelchli","Charlotte Joller"],"flow_injection_analysis_protocol":["Metabolomics analysis was performed using flow injection-time of flight mass spectrometry (FIA) on a platform consisting of an Agilent 1200 pump coupled to a Gerstel MPS2 autosampler and an Agilent 6550 QTOF mass spectrometer (Agilent, Santa Clara, USA) operating in negative ionisation mode with published parameters (Fuhrer et al., 2011). Briefly, a mobile phase of isopropanol:water 60:40% (v/v) buffered with 5 mM ammonium fluoride was supplied at a rate of 150 µL min-1. Homoserine and Hexakis (1H, 1H, 3H-tetrafluoropropoxy)-phosphazine were added to the mobile phase for online mass axis correction. Mass spectra ranging within 50-1000 m/z were recorded at a frequency of 1.4 spectra s-1 using maximum resolving power. The source temperature was set to 325 °C, with 5 L min-1 drying gas and a nebulizer pressure of 30 spig. Fragmentor, skimmer, and octupole voltages were set to 175 V, 65 V, and 750 V, respectively. Technical blanks (methanol: ultrapure water 1:1 and 20 mM ammonium acetate), sample pools and a standard mixture of 1 µM amino acids were used as quality controls (QC). Samples were injected twice in random order with blank injections between sample groups (QC, exudates, tissues) to reduce sample carryover. The mean of replicated sample measures was taken for data analysis.
"],"organism_part":["standard","blank","root","shoot","root exudate"],"technology_type":["mass spectrometry assay"],"disease":[""],"extraction_protocol":["Before metabolomics analysis, exudates were gently thawed on ice and diluted according to root fresh weights (McLaughlin et al., 2023).
Frozen roots and shoots were ground to a powder in liquid nitrogen and metabolites were extracted twice on ice in methanol:acetonitrile:ultrapure water 2:2:1 (v/v) for 1 h with intermittent vortexing. After centrifugation at 10’000 g and 4 °C for 5 min, supernatants of both extraction rounds were pooled and dried under vacuum. For metabolite analysis, dried extracts were resuspended in methanol:ultrapure water 1:1 (v/v) according to the tissue fresh weight (200 µL per 70 mg of tissue) and diluted 150 times (McLaughlin et al., 2023).
"],"organism":["standard","Arabidopsis thaliana","blank"],"full_dataset_link":["https://www.ebi.ac.uk/metabolights/MTBLS14526"],"author":["Jan Waelchli. University of Basel. jan.waelchli@unibas.ch.","Nicola Zamboni. ETH Zurich. nzamboni@ethz.ch.","Charlotte Joller. University of Basel. charlotte.joller@unibas.ch.","Joelle Sasse. University of Zurich. joelle.schlaepfer@agroscope.admin.ch.","Klaus Schlaeppi. University of Basel. klaus.schlaeppi@unibas.ch."],"data_transformation_protocol":["Analysis of FIA data was carried out in R v4.4.2 (R Core Team, 2024). To remove metabolite background noise, FIA data were filtered against experimental blanks (blank glass-microcosms and blank Petri dishes for exudates), technical blanks (methanol:ultrapure water 1:1 for tissues). Metabolites were excluded as background if their median intensities in exudate samples were not at least twice as high as the median intensities in blanks. Sample intensities were normalised using Probabilistic Quotient Normalisation (PQN) (Xia and Wishart, 2011) and for multivariate analysis, metabolites were scaled using autoscaling (van den Berg et al., 2006).
"],"study_factor":["Treatment","Timepoint"],"submitter_email":["jan.waelchli@unibas.ch","charlotte.joller@live.de"],"sample_collection_protocol":["Seedlings were pricked to fresh 0.5 strength MS-Agar plates after one week of growth under controlled conditions in a plant growth chamber (Percival, CFL Plant Climatics, Wertingen, Germany) set to short days with 10 h light (220 µmol m-2 s-1) (21 °C), and 14 h darkness (18 °C) and grown for two more weeks before being transferred to microcosms. Glass-microcosms were prepared as described (McLaughlin et al., 2023). Briefly, 150 mL of glass beads (5 mm) were added to 850 mL glass jars (5743922, Weck glass and packaging GmbH, Bonn, Germany), autoclaved and amended with 35 mL of liquid 0.5 MS. Three plants were added per microcosm. Microcosms were sealed with glass lids and micropore tape. Note that air exchange was enhanced by using micropore tape to introduce a space between the lid and the jar (McLaughlin et al., 2023).
Half the microcosms were inoculated with a synthetic bacterial community composed of 9 strains (SynCom9) one day after the transfer to microcosms. The inoculum for microcosms was prepared as described (McLaughlin et al., 2023). Briefly, single colonies were picked to prepare dense suspensions in 800 µL of 10 mM MgCl2. Strain suspensions were washed three times in 10 mM MgCl2 and mixed in equal volumes. This mix was adjusted to a final OD600 of 0.002 in 0.5 strength MS, which was used as the substrate solution in microcosms.
Plants were cultivated in microcosms for 13 days.
Exudates were collected in a time series at 0, 1, 2, 4 and 12 days after SynCom9 inoculation under axenic conditions. Exudates were harvested by replacing the growth medium with 35 mL exudate collection solution equimolar to 0.5 MS (20 mM sterile-filtered ammonium acetate) for 2 h. The same procedure was followed with unplanted microcosms to obtain experimental blank samples. Tissues of single plants within one microcosm were separated after exudate harvest to use for SynCom9 and metabolite profiling.
"],"omics_type":["Metabolomics"],"study_design":["standard","Metabolomics","blank","bacteria","Flow Injection Analysis","untargeted analysis","Plant Exudates","microbiome","root exudate","untargeted metabolite profiling","Arabidopsis thaliana","Agilent","Agilent 6550 iFunnel Q-TOF","plant","root","Time Series","synthetic microbial community","shoot","experimental blank"],"curator_keywords":["standard","Metabolomics","blank","bacteria","Flow Injection Analysis","untargeted analysis","Plant Exudates","microbiome","root exudate","untargeted metabolite profiling","Arabidopsis thaliana","Agilent","Agilent 6550 iFunnel Q-TOF","plant","root","Time Series","synthetic microbial community","shoot","experimental blank"],"mass_spectrometry_protocol":["Metabolomics analysis was performed using flow injection-time of flight mass spectrometry (FIA) on a platform consisting of an Agilent 1200 pump coupled to a Gerstel MPS2 autosampler and an Agilent 6550 QTOF mass spectrometer (Agilent, Santa Clara, USA) operating in negative ionisation mode with published parameters (Fuhrer et al., 2011). Briefly, a mobile phase of isopropanol:water 60:40% (v/v) buffered with 5 mM ammonium fluoride was supplied at a rate of 150 µL min-1. Homoserine and Hexakis (1H, 1H, 3H-tetrafluoropropoxy)-phosphazine were added to the mobile phase for online mass axis correction. Mass spectra ranging within 50-1000 m/z were recorded at a frequency of 1.4 spectra s-1 using maximum resolving power. The source temperature was set to 325 °C, with 5 L min-1 drying gas and a nebulizer pressure of 30 spig. Fragmentor, skimmer, and octupole voltages were set to 175 V, 65 V, and 750 V, respectively. Technical blanks (methanol: ultrapure water 1:1 and 20 mM ammonium acetate), sample pools and a standard mixture of 1 µM amino acids were used as quality controls (QC). Samples were injected twice in random order with blank injections between sample groups (QC, exudates, tissues) to reduce sample carryover. The mean of replicated sample measures was taken for data analysis.
"],"metabolite_name":["cis-11-Methyl-2-dodecenoic acid","Paeoniflorigenone","Staurosporine","Prostaglandin G2","L-Capreomycidine","Corilagin","5-O-Methyl-myo-inositol","Benzyl 2-methyl-3-oxobutanoate","2',3'-Cyclic UMP","Dihydroxyfumarate","Butynol","Ectoine","Cycloate","Coumestrol","Formyl-Asp","Pantothenol","Kinetin","de-Hypoxanthine futalosine","N-Nitrosoproline","3-Hydroxy-3-(3-hydroxy-4-methoxyphenyl)propionyl-CoA","Dihydrokaempferol","Sterol 3-beta-D-glucoside","Allicin","alpha-(p-Methoxyphenyl)-6-methyl-2-pyridineacrylic acid","Methanesulfonic acid","Carpipramine maleate","Citrulline","Scopoletin","Glycolate","Hispidol","Quercetin 3-O-glucoside","Castasterone","Polypodine B","Benzoate","1,2-Didodecanoyl-sn-glycero-3-cytidine-5'-diphosphate","(1-Hydroxycyclohexan-1-yl)acetyl-CoA","N-((R)-Pantothenoyl)-L-cysteine","(2S,3S)-2-Hydroxytridecane-1,2,3-tricarboxylate","Gallocatechin-(4alpha->8)-epigallocatechin","N-Acetyl-D-tryptophan","2-Amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid","Decursin","2-Amino-9,10-epoxy-8-oxodecanoic acid","Furfural","O-Butanoylcarnitine","Vermelone","Haplopine","Ilexolide A","Catharine","Lusitanicoside","Arginine","Ricinine","4-Methylene-L-glutamine","Deamino-NAD+","Hydroxybutynal","C13:0","Toxoflavine","6-Deoxocastasterone","N-Methylhexanamide","Glutathione","Glucohirsutin","7-Dehydrodesmosterol","Gnidicin","3-Hydroxy-2-methylpyridine-4,5-dicarboxylate","Chrysoeriol","13-Apo-beta-carotenone","4-O-(beta-L-Arabinofuranosyl)-(2S,4S)-4-hydroxyproline","1,2-Bis(4-nitrophenyl)ethane","Gentiopicrin","4-Amino-2-methyl-5-phosphomethylpyrimidine","all-trans-Heptaprenyl diphosphate","4,4'-Sulfonyldiphenol","Aminoadipate","7,8-Diaminononanoate","Isophorone","2-Hexaprenyl-3-methyl-6-methoxy-1,4-benzoquinone","dTDP-D-mycaminose","(1R,6R)-6-Hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate","C24:1","C24:0","6''-O-Carbamoylkanamycin A","Violanthin","Levetiracetam","2-Aminoethylphosphonate","1,2-Bis(4-hydroxy-3-methoxyphenyl)ethylene","Hexose oxime","Erucic acid","cis-1,2-Dihydro-3-ethylcatechol","Glycerophosphoglycerol","Robinin","6-Thioxanthine 5'-monophosphate","Saccharin","3-(Acetyloxy)-9-mercaptoandrosta-3,5-diene-11,17-dione","N-Acetyllactosamine","Soyasaponin II","Dimethisterone","Piperidione","2-Hydroxymethylserine","8-Amino-7-oxononanoate","L-Albizziine","Maleimide","IBMX","Colubrin","Mupirocin","Helveticoside","Benzyl alcohol","Glutathionylaminopropylcadaverine","Levofuraltadone","3alpha,12alpha-Dihydroxy-5beta-pregnan-20-one diacetate","Sinapoyltartronate","7-(Acetyloxy)-3-(3-pyridinyl)-2H-1-benzopyran-2-one","Paeonolide","Scymnol","Chloropropanoic acid","L-Selenocystathionine","1-Dodecanoyl-sn-glycerol","N3'-Acetylapramycin","Ornithine","Eugeniin","Tetrodotoxin","Androsterone glucuronide","Isovalerylcarnitine","Serine","dTDP-6-deoxy-beta-L-talose","Fusidic acid","Paramethadione","HC Blue No. 2","Cholylglycine","2-Phosphoglycolate","Rutaecarpine","dTDP-4-dimethylamino-4,6-dideoxy-5-C-methyl-L-mannose","Benzamide","Trichodermin","4-(beta-D-Glucosyloxy)benzoate","Acrolein","2-Phosphinomethylmalate","Sodium folinate","2,3-Dihydroxycyclopentaneundecanoic acid","C15:1","C15:0","N-[4-(5-Nitro-2-furyl)-2-thiazolyl]acetamide","8,8a-Deoxyoleandolide","4-Methyl-2-oxopentanoate","Fraxetin","D-Lysopine","6-Hydroxypseudooxynicotine","2-C-Methyl-D-erythritol 4-phosphate","Adenosine","Abyssinone I","alpha-Tocopherol acetate","Androst-4-ene-3beta,17beta-diol diacetate","Prostaglandin B1","Cyasterone","Indolepyruvate","3-Dehydroshikimate","4,4-Dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol","Piceid","Methomyl","Butabarbital","Hexonic acid","Neolinustatin","Oligomycin C","Oligomycin A","Fenuron-TCA","D-Erythrose 4-phosphate","2,3-Dinor-8-iso prostaglandin F2alpha","Methyleugenol","Aspartate semialdehyde","N-Acetylneuraminate","Peimine","1,3-Benzenedisulfonamide","Purine mononucleotide","2-Chloro-cis,cis-muconate","dCDP","C28:3","Candesartan","Stearidonic acid","(+)-Pinoresinol","C28:1","11-O-Demethylpradinone II","Argatroban","Sisomicin","Chinomethionat","Traumatic acid","1-Naphthalenesulfonic acid","2-Hydroxy-6-oxo-6-(2-hydroxyphenoxy)-hexa-2,4-dienoate","Glutathione episulfonium ion","1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-cytidine-5'-diphosphate","10-Deoxymethynolide","Hellebrigenin 3-acetate","Pectenotoxin 1","Pseudoargiopinin III","(-)-Jasmonic acid","Sphingosine","(Ac)2-L-Lys-D-Ala","Resazurin","Glucoraphanin","Trisaccharide","sn-Glycero-3-phosphoethanolamine","Coryneine","2-Hydroxybenzo[a]pyrene","Tetrahydrocortisone","Threonine","Thien-2-ylacetate","9,12,13-TriHOME","2-Thiophenesulfonamide","(1-Ribosylimidazole)-4-acetate","N-Acetyl-D-fucosamine","HR1917","Agrimol C","Musaroside","delta-Guanidinovaleric acid","S-(2-Hydroxyethyl)-N-acetyl-L-cysteine","Dithianon","3-Nitrosothiazolidine","Phenylethylmalonamide","Glucono-lactone","2,3-Dimethylmaleate","Phenylacetaldehyde","Lythidathion","Azinphos-methyl","Succinic anhydride","Umbelliferone","2-Quinolinecarboxylic acid","1-O-Vanilloyl-beta-D-glucose","1-O-Hexadecyl-sn-glycerol","4-Maleylacetoacetate","TS-TM-calix(4)arene","4-Hydroxyphenylacetate","Guanine","16alpha,17beta-Dihydroxyandrost-4-en-3-one dipropionate","trans,octacis-Decaprenylphospho-beta-D-ribofuranose 5-phosphate","Ethyl 3-(N-butylacetamido)propionate","(5Z,13E)-11alpha-Hydroxy-9,15-dioxoprost-13-enoate","7,8-Dihydroxykynurenate","Protoporphyrinogen IX","Cyclic dehypoxanthine futalosine","N-Heptanoylhomoserine lactone","5-O-Feruloylquinic acid","3,5-Dihydroxy-1,4-naphthoquinone","3-(4-Methylpent-3-en-1-yl)pent-2-enedioyl-CoA","Hydroxypyruvate","L-Arogenate","Indole-3-acetaldoxime N-oxide","O-Propanoylcarnitine","Hydroxymethylphosphonate","4-Methylthiobutylthiohydroximate","Abietate","Heritonin","4-O-(beta-L-Arabinofuranosyl-(1->2)-beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranosyl)-(2S,4S)-4-hydroxyproline","Hexuronic acid; Ascorbate","Sterol","Gyromitrin","Maleamic acid","Argiotoxin 659","2-Hydroxyiminostilbene","Cefotaxime","Veratramine","Pikromycin","UDP-L-Ara4N","(-)-Sympatol","Diginatin","O-Phospho-4-hydroxy-L-threonine","Chenodeoxycholate","Volicitin","Protopanaxadiol","Demethylphosphinothricin","Furoic acid","N-Acetylimidazole","Hexose P","Ibuprofen","(8Z,11Z,14Z)-Icosatrienoic acid","Aquayamycin","Glutamyl-glutamic acid","N-Adenylyl-L-phenylalanine","9-Oxononanoic acid","Tyr-OEt","Dibutyl adipate","4-Hexyloxyphenol","Latia luciferin","Ornaline","Glutamate","Carnitine","Tetrose","(+/-)-6-Acetonyldihydrosanguinarine","2-Oxo-7-methylthioheptanoic acid","2-Amino-5-phosphopentanoic acid","Hexazinone","Benzofuran","Cucurbic acid","5-Guanidino-3-methyl-2-oxopentanoate","(2R,3R)-3-Methylglutamyl-5-semialdehyde-N6-lysine","ML-236C","Mangiferin","Urate D-ribonucleotide","Asiatic acid","Akeboside Ste","Dihydroclavaminic acid","Vanillyl alcohol","Sarcoaldesterol A","Dihydroxy-Val","16-Hydroxypalmitate","Ferroxamine","Gibberellin A12 aldehyde","Propylthiouracil","Echinenone","N-Nitrosodiphenylamine","Lycoflexine","2-Oxooctadecanoic acid","Glyoxylic acid","1,3-Dimethyl-8-isoquinolinol","Tiagabine","Manniflavanone","Thiobenzamide S-oxide","Nuatigenin","L-Adrenaline","7alpha-Hydroxycholesterol","Oleoylglycerone phosphate","Aminoalanine","Dehydrojuvabione","Brusatol","Graphinone","3-Ketosphingosine","C19:0","13,16,19-Docosatrienoic acid","Glucoalyssin","Indolelactate","Thymine","Farrerol","Fagaramide","5-Amino-4-chloro-2-(5-hydroxymuconoyl)-3(2H)-pyridazinone","Thiodiacetic acid","Mucronine A","Calcidiol","Dihydrolipoamide","Levomethadyl acetate","Mucronine B","Ergocristine","Kikkanol A","beta-Alanyl-L-lysine","4-Amino-1-piperidinecarboxylic acid","Taurine","Epothilone D","Phaseolic acid","Mancinellin","Amastatin","Diisopropyl phthalate","Geldanamycin","1-(3,4-Dihydroxyphenyl)-5-hydroxy-3-decanone","Lithocholic acid","C9:1","Succinic aldehyde","Osladin","3-Mercaptolactate","Danielone","5-L-Glutamyl-taurine","Verruculogen","Pyridoxal","16alpha-Hydroxydehydroepiandrosterone","Methyl 2-diazoacetamidohexonate","(10S)-Juvenile hormone III diol","Falcarindiol","Acetohexamide","Imperialine","Cefsulodin sodium","Glycerol","N-Acetyl-D-glucosamine","Potassium 2,6-dihydroxytriazinecarboxylate","Catechol","Oxoglutarate","Danazol","2-Dehydro-D-xylonate","Oxaloacetic acid","Phytuberin","Prometon","Ubiquinone-6","Isoscoparine","Hordatine B","3-(4-Hydroxyphenyl)lactate","Hordatine A","Glycyrrhetaldehyde","Acetyl-Leu","Clocapramine dihydrochloride","Succinimide","Undecanoic acid","Cyclo[(Z)-alpha,beta-didehydrophenylalanyl-L-leucyl]","dTDP-hexose","1-O-Sinapoyl-beta-D-glucose","Calcitriol","Phospho-anandamide","Propenoic acid C3:1","Officinalisnin I","Juvenile hormone II acid","Trabectedin","Coumarate","5alpha-Cyprinol","Stylisterol B","Anthemis glycoside B","3-Methyleneoxindole","5-Methylthiopentanaldoxime","Elaeokanine C","1-Guanidino-1-deoxy-scyllo-inositol 4-phosphate","Pentonic acid","N-Desmethylzolmitriptan","Benzoylagmatine","Pahutoxin","6-Pentadecylsalicylic acid","Dopamine","Phenylalanine","(-)-Acanthocarpan","N-Acetylgalactosaminate","(5-L-Glutamyl)-L-glutamine","Brevianamide F","4-Methoxyglucobrassicin","Niridazole","Dihydrolipoate","Bruceoside A","6-Deoxoteasterone","dCMP","Stovaine","2-Oxo-4-phosphonobutanoate","2,3,9,10-Tetrahydroxyberbine","7-Methylthioheptanaldoxime","Pantothenate","Testosterone","Furazolidone","Psoralidin","Soyasapogenol B","Oxobutanoic acid","Gitogenin","CDP-glycerol","Isoorientin 2''-O-rhamnoside","D-Glucono-1,5-lactone 6-phosphate","Aconitate","Uracil","Diacetylhydrazine","Rhein","Aplysin","N-(3-Oxooctanoyl)homoserine lactone","N-Caffeoylputrescine","N-Sulfo-D-glucosamine","Acetyl-Phe","Aminopentanamide","Stipitatonate","(R)-3-((R)-3-Hydroxybutanoyloxy)butanoate","Bakkenolide A","5-Aminolevulinic acid","Hydrocortisone caproate","(6S,9R)-Vomifoliol","Cholesterol sulfate","Cytosine","Cys","Centarol","Pentanoic acid","(-)-Menthyl O-beta-D-glucoside","GDP-hexose","Ethosuximide","L-Cystine","Nitrosopiperidine","Cobalt-precorrin 3","Erythromycin","Parathion-methyl","N-Hydroxy-MeIQx","Falcarinone","Bufotenidine","Aralionine A","S-(4-Bromophenyl)-L-cysteine","1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine","3-Hexaprenyl-4,5-dihydroxybenzoate","Malate","Oxalic acid","Cobalt-precorrin 7","(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate","N-Phosphohypotaurocyamine","2,3-Dihydroxybenzoate","4-[2-(5-Carboxy-2-hydroxy-3-methoxyphenyl)-2-oxoethylidene]-2-hydroxy-2-pentenedioate","cis-1,2-Dihydronaphthalene-1,2-diol","2-Hydroxycyclohexan-1-one","Geranyl formate","20-O-Methyl-19-chloroproansamitocin","Premithramycin A3'","2-Oxoglutaramate","Heptadecatrienoic acid","6beta-Hydroxy-D-homo-17a-oxaandrost-4-ene-3,17-dione","Jatrophatrione","p-Coumaroylagmatine","Diosmin","Indole-3-acetate","Methylazoxymethanol","3-Hydroxy-palmitic acid methyl ester","Triptolide","Sapelin A","Calystegin B2","Hydroxy-valine","Aminophenol","Phytanate","Bepridil","Cholesteryl-beta-D-glucoside","Phensuximide","Theogallin","3,7-Di-O-methylquercetin","Eudistomin C","C4:0 (Butyric acid)","1'-Acetoxyeugenol acetate","Pyruvate","4-Chloro-alpha-[4-[2-(diethylamino)ethoxy]phenyl]-alpha-phenylbenzeneethanol","Aminomethylurea","(9R,10R)-Dihydroxyoctadecanoic acid","Methyl-Lys","Naphthalene-1,2-diol","Anthranilate","alpha-Tocotrienol","UDP-ketopentose","Krm 1657","Tuberonic acid glucoside","Digitalin","Cyclic ADP-ribose","5-Hydroxyferulic acid methyl ester","Glutamine","Terpendole G","Terpendole I","Dihydropinosylvin","Benzosemiquinone","3beta-Hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylate","Furcatin","Harzianopyridone","sn-Glycerol 3-phosphate","Spicamycin","2-Hydroxycyclohexane-1-carboxyl-CoA","Histidine","2-(2,4,5-Trimethoxyphenyl)-5,6,7,8-tetramethoxy-4H-1-benzopyran-4-one","C5:2","Deltorphin C","Gratiogenin","2-Hydroxy-6-oxo-6-(2-hydroxyphenyl)-hexa-2,4-dienoate","(6Z,9Z,12Z)-Octadecatrienoic acid","Valtratum","Leu-Gly-Pro","3alpha,7alpha,12alpha,26-Tetrahydroxy-5beta-cholestane","Digitalose","Tyramine","Niddamycin","5-Methyl-5,6,7,8-tetrahydromethanopterin","2,3,4,5-Tetrahydrodipicolinate","Metyrapone","Trinexapac-ethyl","3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestan-26-al","12-Hydroxydodecanoic acid","(9Z)-Hexadecenoic acid","Oxoproline","Valerolactone","Hydroxybutanoic acid","Deoxyhexose","Neuraminic acid","5'-Hydroxystreptomycin","Proclavaminic acid","Formononetin","3-Phosphonooxypyruvate","Edrophonium","Glimepiride","2,3-Dinor-8-iso prostaglandin F1alpha","Goitrin","5-(Heptadec-12-enyl)resorcinol","Hexanoic acid","Decylubiquinol","4-Ketomyxol","Acetyl-maltose","Undecylprodigiosin","Glucovanillin","C32:0","1,4-Bis(2-ethylhexyl) sulfosuccinate","Euphornin","Diethylcarbamazine","Luteolin","Hymenoxon","Mycinamicin IV","Citronellyl formate","4-Sulfobenzoate","trans-4-Hydroxycyclohexanecarboxylate","Alanine","Apigenin 7-O-[beta-D-apiosyl-(1->2)-beta-D-glucoside]","2-Oxosuccinamate","4-Imidazolone-5-propanoate","Glycogen","N-Acetylputrescine","3beta-Hydroxysteroid","Tryptophan","Methicillin sodium","Xanthine","D-Mycinose","Glycyrrhetinate","6-Oxabicyclo[3.1.0]hexane-2-undecanoic acid methyl ester","Asparagine","5beta-Pregnane-3alpha,17alpha,20alpha-triol","Istamycin A1","Tricrozarin A","4-Sulfobenzyl alcohol","Acetylcysteine","1D-1-Guanidino-1-deoxy-3-dehydro-scyllo-inositol","Rimsulfuron","7beta-Hydroxytaxusin","2'-Hydroxybiphenyl-2-sulfinate","Decanoic acid (FA10:0)","4,8-Dihydroxyquinoline","Acanthicifoline","7-Deoxyloganetin","Daphnin","Bremazocine","(Z)-4-(2-Hydroxy-5-sulfonatophenyl)-2-oxo-3-butenoate","C10:3","Carbonic acid","3A-Deolivosylpremithramycin B","C10:1","3-Propylmalate","7-Methylthioheptyl glucosinolate","Acetylagmatine","Menadione","(9Z)-(13S)-12,13-Epoxyoctadeca-9,11-dienoic acid","D-Prephenyllactate","Puerarin xyloside","Hydroxyglutarate","N1-Methyl-2-pyridone-5-carboxamide","Geranylhydroquinone","2-Pyrone-4,6-dicarboxylate","4-Methylthiobutanaldoxime","Doxercalciferol","Solasodine","Phyllanthin","4-Nitrocatechol","Diosgenin","cis-4,5-Dihydroxy-4,5-dihydropyrene","Daphnoretin","C21:3","3beta,5alpha,6beta-Cholestanetriol","Sedoheptulose","Ethion","(9Z)-(7S,8S)-Dihydroxyoctadecenoic acid","Narbomycin","Methyl-His","Integerressine","5-Methyl-2'-deoxycytidine","Formyl-CoA","Acetyl-Glu","Mycalamide B","12-Keto-leukotriene B4","Corniculatusin","Urocortisol","Dihydrothymine","Eleutheroside A","Peonidin-3-(p-coumaroyl)-rutinoside-5-glucoside","Urocanate","Testolate","6-Acetyl-D-glucose","Burseran","5alpha-Ergosta-7,22-diene-3beta,5-diol","Valine; Betaine","Di(2-ethylhexyl) adipate","N-Acetyl-D-glucosaminyl-N-acetylmuramoyl-L-Ala-D-glutamyl-6-carboxy-L-lysyl-D-alanine","alpha-Oxo-benzeneacetic acid","13,16-Docosadienoic acid","UDP-acetyl-hexosamine","Ziprasidone","Dethiobiotin","Marinobufagenin","Dodecanoic acid (FA12:0)","Maltohexaose","Ethyl 3-oxohexanoate","Rutin","C3:0 (Propionic acid)","Microhelenin C","Xylitol","N-Phosphotaurocyamine","DIDS","5-Hydroxy-L-tryptophan","Phosphonoformyl-CMP","Sinapate","Pipecolate","(-)-Glyceollin I","Deoxyloganic acid tetraacetate","Pfaffoside A","Diphenylcarbazide","Bufadienolide","3-O-Ethyl-L-ascorbic acid","Octanoic acid","Ophiopogonin D","Coniferyl alcohol","Hydroxyadipate","Salicin 6-phosphate","Pentose","Ethyl isovalerate","4-Guanidinobutanoate","C12:4","C12:1","Thalidomide","Methamidophos","7,3'-Dihydroxy-4'-methoxy-8-methylflavan","O-Succinyl-L-homoserine","2S-Hydroxytetradecanoic acid","Dihydromyricetin","dTDP-L-mycarose","5-Nitrofurfural","5-O-Methylembelin","3-(2-Carboxyethenyl)-cis,cis-muconate","Biotin","2,2-Dimethyl-3-(4-methoxyphenyl)-4-propyl-2H-1-benzopyran-7-ol acetate","Bz-Arg-OEt","Decaline","(R)-(Homo)3-citrate","Hexamethylphosphoramide","Lathodoratin","Trilobine","Phenol","1-Ethyl-2-benzimidazolinone","Pheophorbide a","N-(p-Hydroxyphenethyl)actinidine","(Iso)Citrate","5,6,7-Trimethoxycoumarin","Methylphenidate","16-Oxo-palmitate","5-exo-Hydroxy-1,2-campholide","Tributyrin","alpha-Tocopherol","5-Acetamidopentanoate","3-beta-D-Galactosyl-sn-glycerol","Glycine","3-(3,4-Dihydroxyphenyl)lactate","Phenylacetyl-CoA","Dinotefuran","Sclareol","Pfaffic acid","L-Olivosyl-oleandolide","Cefixime","3'-Deoxydihydrostreptomycin","D-Glyceric acid","17beta-Hydroxy-4,17-dimethyl-4-azaandrost-5-en-3-one","3'-Deoxydihydrostreptomycin 6,3''-bis-phosphate","Trihomomethionine","Peganine","7-Hydroxymethyl-12-methylbenz[a]anthracene sulfate","Demeton-S-methyl","2'-N-Acetylparomamine","N'-Nitrosoanatabine","Cathasterone","17beta-(Acetylthio)estra-1,3,5(10)-trien-3-ol acetate","Bowdichione","Ginkgolide A","Furfural diethyl acetal","Pyrroline carboxylic acid","Sodium salicylate","Sativanine B","Butopyronoxyl","Methylselenopyruvate","Betulinic acid","EPTC","Fortimicin KL1","Integerrenine","5-Hydroxythiophene-2-carbonyl-CoA","N-Nitrosoguvacoline","Butoctamide hydrogen succinate","Prosolanapyrone II","3-Oxoglycyrrhetinate","DMSO","Guanosine","Sinapyl alcohol","5-Hydroxyindoleacetylglycine","(E)-4-(Trimethylammonio)but-2-enoate","Trimethoprim","(Iso)Leucine","Quillaic acid","Pentose alcohol-P","7-Mercaptoheptanoylthreonine","Esprocarb","ADP","Disaccharide","2-Methoxy-5Z-hexadecenoic acid","Prorocentrolide","C14:1","C14:0","Kaempferol 3-sophorotrioside","Formetanate","Norethindrone enanthate","Mescaline","Acetyl-His","Coproporphyrin I","Apiole","P-homoserine","Eriojaposide A","Loganin","Eriojaposide B","Methylthioglycolic acid","Amifostine","dTDP-beta-L-rhodinose","3-Isopropylcatechol","5-O-(Indol-3-ylacetyl-myo-inositol) D-galactoside","Tribenuron methyl","Nicotinurate","Cycloheptanecarboxylic acid","Sulfamethazine","Iproniazid","Uridine","Soyasapogenol B 3-O-D-glucuronide","Isopropylmaleate","Dimethyl-Arg","2,3,6-Trihydroxypyridine","Pentadecanal","Pindolol","1,2-Bis-O-sinapoyl-beta-D-glucoside","Vicianose","Juvenile hormone II","N-Feruloylglycine","Cymarin","Proline","Schizonepetoside E","Benzoyl phosphate","PR-toxin","gamma-L-Glutamyl-D-alanine","Nummularine F","6-Hydroxyindolelactate","Kinobscurinone","alpha-1,5-L-Arabinotriose","Aminobutanoic acid (ABA)","Belladonnine","alpha-Amanitin","2,4-Bis(acetamido)-2,4,6-trideoxy-beta-L-altropyranose","Stanolone benzoate","Tomatidine","1-Palmitoylglycerol 3-phosphate","NDEA","Arachidonate","N-(2,3-Dihydroxybenzoyl)-L-serine","Ureidoglycine","Macrocin","(-)-Menthone","Glucoiberin","Montanol","Ryanodine","8-Azaadenosine","2-Hydroxymethylclavam","(9Z,12Z)-(8R)-Hydroxyoctadeca-9,12-dienoic acid","4-Nitroquinoline N-oxide","Diphenoxylate","3-Hydroxyanthranilate","Pradimicin C","UDP-hexose","Ziziphin","C16:0","(10S)-Juvenile hormone III acid diol","Condurangogenin C","L-Cladinose","2-Hexaprenyl-6-methoxy-1,4-benzoquinone","N-(Acetyloxy)benzenamine","6-Methoxymellein","Scytalone","3-Ethoxyandrosta-3,5-dien-17beta-ol propanoate","Stipitatate","Tarennoside","C16:3","Triethylene glycol diglycidyl ether","C16:2","(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside","Rindoside","(S)-beta-Methylindolepyruvate","Methylcytosine","Sanggenon E","Diisononyl phthalate","Acetone cyanohydrin","Anhydrorhodovibrin","Asimicin","Suberic acid","3-Hydroxy-vitamin K","Luteolin 7-O-(6''-malonylglucoside)","Hexahomomethionine","L-Ascorbic acid-2-glucoside","Sulfathalidine","Ceftriaxone","Delphinidin 3-O-3'',6''-O-dimalonylglucoside","3,4-Dihydroxyphthalate","Acetylornithine","Darlingine","2-Hydroxy-2,4-pentadienoic acid","Compactin diol lactone","Loganate","Octhilinone","Prosulfocarb","3-Dimethylallyl-4-hydroxymandelic acid","Aspartate","cis-(Homo)3-aconitate","Pyridoxine","Correolide","Cefazolin","Oxethazaine","Quercitrin","Diaminopimelate","Hydroxy-Glu","NONOate","beta-Tocotrienol","Paromomycin","Leurosine","Dihydrobiopterin","Bis(2-ethylhexyl)phthalate","Acetone","Dictamnine","Ingenol 3,20-dibenzoate","Pregnenolone acetate","Capsaicin","Versiconal","Bilirubin","Westiellamide","1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide","Hippurate","Hydroprene","Zizybeoside I","sn-Glycero-3-phospho-1-inositol","Bruceine D","Acetyl-Asp","8-(3,3-Dimethylallyl)spatheliachromene","7-Methyl-2-hydroxy-6-oxoocta-2,4-dienoate","Phenacetin","2-Chloro-5-methyl-cis-dienelactone","Fructoselysine 6-phosphate","Cyclopentanone","Indole-3-acetyl-myo-inositol","2-Deoxy-D-ribose 1-phosphate","C18:5","Hesperetin","Pterin","9-cis-10'-Apo-beta-carotenal","C18:2","Progeldanamycin","PD 123319","Thio-THIP","Monomethyl sulfate","Retinoate","5-(2'-Carboxyethyl)-4,6-dihydroxypicolinate","6-Amino-6-deoxyfutalosine","Cytidine","Aphidicolin","Irinotecan carboxylate","Caffeic acid 3-glucoside","Glucoerucin","Crotanecine","22-Oxo-docosanoate","Homostachydrine","1-Hydroxy-6-methoxypyrene","Phosphoserine","Glaucolide B","Itaconate","Sudan I","N-(4-Coumaroyl)-L-homoserine lactone","Methoprene","CI Acid Orange 3","Kaempferol 3-O-[6-(4-coumaroyl)-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside]","Stearoylglycerone phosphate","10-Hydroxydecanoic acid","Pyruvate oxime","N-Acetyl-ala-ala-ala-methylester","Stealthin C","3-Hydroxy-2-(4-morpholinylmethyl)estra-1,3,5(10)-trien-17-one","9-Methylthiononanaldoxime","(R)-2-Hydroxystearate","Phenolphthalin","1'-Acetoxychavicol acetate","Naphthalic anhydride","4-Amino-4-deoxychorismate","(+)-Prosopinine","Amylopectin","Pulcherriminic acid","Oleoylethanolamide","Capsorubin","Propylhydroxypentanoic acid","Erythromycin B","Erythromycin C","L-(+)-Anaferine","Quinate","Neomethymycin","Toluene-cis-dihydrodiol","4-Methylene-L-glutamate","2-Imino-3-(7-chloroindol-3-yl)propanoate","Gypsogenin 3-O-rhamnosylglucuronide","N-Ethylmaleimide","3-Methyl-cis,cis-hexadienedioate","2,5-Dihydroxypyridine","Naringenin","3-(4-Hydroxyphenyl)pyruvate","Glucoerysolin","Allantoin","Ephedrine","Carpacin","2,3-Dihydroxy-p-cumate","Syringin","trans-2-[(Dimethylamino)methylimino]-5-[2-(5-nitro-2- furyl)-vinyl]-1,3,4-oxadiazole","Gabaculine","Androstane-3,17-diol dipropionate","Eburicoic acid","Phosphoenolpyruvate","1-Guanidino-1-deoxy-scyllo-inositol","Homoaconitate","Cholesteryl palmitate","gamma-Glutamyl-beta-aminopropiononitrile","17beta-Hydroxy-6beta-methyl-5alpha-androstan-3-one propionate","Lanceotoxin A","S-Methyl-3-phospho-1-thio-D-glycerate","Succinate","Fenitrothion","Gly-Leu","Castanospermine","Methionine","Muramic acid","Chlorogenate","4-Amino-2,6-dinitrotoluene","Porphobilinogen","2-Oxosuberate","Sodium methallylsulfonate","Methyl acetyl ricinoleate","Otonecine","Asebogenin","Cortisol 21-acetate","3,9-Dihydroxypterocarpan","Dopaquinone","Tuliposide B","Acetyl-Glu-semialdehyde","4-Pyridoxate","Cefpiramide sodium","Phosphoenol-4-deoxy-3-tetrulosonate","4-O-beta-D-Glucosyl-4-hydroxycinnamate","Glepidotin B","Clavulanic acid","Carmine","6-Ethylchenodeoxycholic acid","12-OPDA","Delsoline","Feruloylputrescine","Cinncassiol B","omega-Cyclohexylundecanoic acid","dTDP-3-amino-2,3,6-trideoxy-C-methyl-D-erythro-hexopyranos-4-ulose","Cuauhtemone","Urate","Tetrahydroharmine","Sodium ortho-phenylphenate","4-Hydroxybenzoate","Shikimate","Prostaglandin F1alpha","1,8-Diazacyclotetradecane-2,9-dione","3-[(3aS,4S,7aS)-7a-Methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate","Glycidyl stearate","Serotonin","Deoxyuridine","N-(3-Oxododecanoyl)homoserine lactone","Fumarate","8-Hydroxyalanylclavam","Molinate","5alpha-Cholestan-5alpha,6beta-diol","Heterodendrin","Acetyl-Met","Butynal","ATP","Dihydroeuparin","Fonofos","Nicotianamine","Hexose","Agrimophol","UDP-4-dehydro-6-deoxy-D-glucose","Berbamine","Homoserine lactone","Rehmaionoside C","4-Acetamidobutanoate","Pretetramid","Atraton","Cannabidiolic acid","Rehmaionoside A","Acetylaminoadipate","Cortol","Muscarine","Phytosphingosine","(R)-(Homo)2-citrate","Spergualin","3-Hydroxykynurenine","Militarinone C","Iminoacetate","Euxanthone","Barringtogenol C","Abscisate","Buddledin A","2-Succinylbenzoate","3-tert-Butyl-5-methylcatechol","2-Hydroxytetracosanoic acid","Harpagoside","Phosphoglycerate","Tyrosine","7-O-Acetylsalutaridinol","Acetatic acid","1,2,6-Hexanetriol","Dihydroxy-methylthiopentanoic acid","(Z)-But-1-ene-1,2,4-tricarboxylate","1,3-Dicaffeoylquinic acid","2'-Norberbamunine","Homoarginine","4,6-Diamino-5-formamidopyrimidine","Nebularine","Shikimate 3-phosphate","Karounidiol","5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate","Coumarin","(3S,5S)-Carbapenam-3-carboxylic acid","Diethyl phenyl phosphate","dTDP-4-oxo-2,3,6-trideoxy-D-glucose","Versicolorin B","1,2-O-Diacetylzephyranthine","Choline-P","3-Oxotetradecanoyl-CoA","3,4-Dihydroxymandelate","Linamarin","O-Phosphoviomycin","Megalomicin C1","Oxoadipate","Betaxolol","1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide","Viguiestenin","Phenacemide","(R)-2-Hydroxybutane-1,2,4-tricarboxylate","Levallorphan","2-Arachidonoylglycerol","Pristimerin","Pyrogallic acid","Rishitin","Aurantio-obtusin beta-D-glucoside","Sulcatone","Ergosine","Rhizocticin B","di-trans,poly-cis-Undecaprenol","Lenacil","3-Aza-A-homocholest-4a-en-4-one","C6:2","3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestanoate","Resveratrol","Atractyloside B","Methyl palmitate","Oxaloglutarate","Cassiaside B2","Phosphoramidon","Asperlicin","4-Heptyloxybenzoic acid","2,7-Anhydro-alpha-N-acetylneuraminic acid","Lythramine","Acetamide","Deoxyvasicinone","N-Pyruvoyl-5-methoxy-3-hydroxyanthranilate","Cyclic di-3',5'-adenylate","MC-207,110","2-trans,6-trans-Farnesal","Ethambutol","Ailanthone","Lactupicrin","Homocysteine","Lumichrome","cis-2,3-Dihydroxy-2,3-dihydro-p-cumate","Guanidinoproclavaminic acid","Rofecoxib","AMPA","Primaquine","Zinnimidine","8-Methylthiooctyl glucosinolate","Tolfenpyrad","13(S)-HPOT","Saccharocin","2-Maleylacetate","Histidinol","D-Cathinone","(S)-ATPA","Tussilagine","Pimelate","L-Mimosine","Camoensine","2-Benzothiazolesulfonamide","N-Glycosyl-L-asparagine","Cucurbitacin H","Nonanoic acid","3-O-Methylquercetin","Naringenin 7-O-beta-D-glucoside","Sebacic acid","Endoxifen","Devapamil","Mevalonate","Dihydrouracil","Meconic acid","Sulfo-Cys","Phylloquinone","8-Anilino-1-naphthalene sulfonic acid","Cucurbitacin S","Testosterone decanoate","6beta-Hydroxy-17beta-estradiol","Phytolaccoside B","Lupeol acetate","Narasin B","Vomitoxin","Phytyl phosphate","5-(2-Hydroxyethyl)-4-methylthiazole","Phthalate","Zoxazolamine","(+)-Norephedrine","Yangambin","beta-D-4-Deoxy-delta4-GlcA-(1->4)-beta-D-Glc-(1->4)-alpha-L-Rha-(1->3)-beta-D-Glc","Dodemorph","Salidroside","Samandarone","Zeaxanthin","Acrylamide","D-Glucarate","Antheraxanthin","BRACO-19","Apigenin","sn-Glycero-3-phosphocholine","Khellol glucoside","Ecdysone","(+)-Camphor","Deoxytubulosine","Pinolidoxin","GDP-D-mannuronate","Propantheline","Ergosterol","Asclepin","Oxaluric acid","Biochanin A","12-trans-Hydroxy juvenile hormone III","Dodecanedioic acid","Tyrindoxyl sulfate","2alpha-Methyl-17beta-[(tetrahydro-2H-pyran-2-yl)oxy]-5alpha-androstan-3-one","Dinitrosopentamethylenetetramine","3-O-alpha-Mycarosylerythronolide B","GDP-D-glycero-alpha-D-manno-heptose","Malvidin-3-(p-coumaroyl)-rutinoside-5-glucoside","ADP-ribose","Thevetin B","4-Heptyloxyphenol","Rhodamine 123","3-(3,4-Dihydroxyphenyl)pyruvate","C20:1","13-Hydroxydocosanoic acid","6-Mercaptopurine ribonucleoside triphosphate","Phosphodimethylethanolamine","Phenyl acetate","Lactate","Goniodomin A","Thymidine","Cucumopine","6-Keto-prostaglandin F1alpha","Kaempferol 3-O-beta-D-xyloside","Vitexin","(R)-2-Methylimino-1-phenylpropan-1-ol","Flavonol 3-O-D-xylosylglucoside","Pantetheine","Ketovaline","N-Acetyl-L-citrulline","Furmecyclox","Oleandomycin","Carlinoside","Carnosifloside III","Bis-D-fructose 2',1:2,1'-dianhydride","(24R,24(1)R)-Fucosterol epoxide","3-Oxododecanoic acid","Formimino-Glu","17beta-Hydroxyestr-4-en-3-one cyclopentanepropionate","Gardenoside","Quercetin 3-(2G-xylosylrutinoside)","Lankacidin C","5-(4-Acetoxybut-1-ynyl)-2,2'-bithiophene","Odoratol","Ophiobolin A","Quercetin 3-O-[beta-D-xylosyl-(1->2)-beta-D-glucoside]","Oxolinic acid","Succinylproline","Allyl-Cys","3beta-Hydroxy-5alpha-cholest-7-ene-4alpha-carboxylate","Indole-3-acetaldehyde","L-Serine-phosphoethanolamine","2-(6'-Methylthio)hexylmalic acid","Ethylketocyclazocine","Mercaptopyruvic acid","N-Nitrosomethylvinylamine","Omethoate","Acremoauxin A","Carboxin","Lauroyl peroxide","2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate","1,2-Dihydrosantonin","Fenthion","Tetrahydroxypteridine","6-Acetamido-3-oxohexanoate","Strigolactone ABC-rings","Cajanol","Riccionidin A","Fagaridine","(S)-ACPA","N-Acetyl-L-2-amino-6-oxopimelate","10-Oxodecanoate","THTC","UDP-6-sulfoquinovose","Lacto-N-tetraose","LG 100268","Homogentisate","Mycothiol","Azelaic acid","C20817","(Ac)2-L-Lys-D-Ala-D-Ala","cis-2-Carboxycyclohexyl-acetic acid","N,N-Diethyl-2-[4-[6-methoxy-2-(4-methoxyphenyl)-1H-inden-3-yl]phenoxy]ethanamine hydrochloride","Dihydroorotate","Anatoxin a(s)","Avermectin B2b","Dihydrozeatin riboside monophosphate","2,5-Furandicarboxylate","3-Sulfocatechol","(9Z,11E)-(13S)-13-Hydroperoxyoctadeca-9,11-dienoic acid","Acetoxolone","Nicotinate","5-Hydroxyindoleacetate","Callystatin A","Oxydeprofos","2alpha-(Hydroxymethyl)-5alpha-androstane-3beta,17beta-diol","Threonate","Deoxycytidine","Carbamoyl phosphate","C22:5","C22:4","2-Methyl-3-hydroxy-5-formylpyridine-4-carboxylate","Histidylleucine","C22:0"],"additional_accession":[]},"is_claimable":false,"name":"Glass vs Clay: dynamic responses of the root exudate, root and shoot tissue metabolome upon SynCom colonisation","description":"Plant roots host defined microbial communities that differ from those in the surrounding soil, and these communities shift dynamically in response to plant development and environmental changes. Whilst it is widely accepted that root exudates play a key role in the assembly and dynamics of root-associated microbial communities, the underlying mechanisms are not well understood. This is partly due to a lack of controlled experimental systems that monitor both microbiome- and exudate-dynamics simultaneously. Focusing on bacteria, we compared two microcosm systems commonly used in either root microbiome (clay particle-based) or root exudate studies (glass bead-based) for their suitability to simultaneously monitor both aspects. After inoculation with a synthetic community (SynCom), we evaluated these systems for plant performance, bacterial growth, and time-resolved community and exudate profiling. Both systems were characterised by higher community evenness and Pseudomonas abundances in proximity to plant roots. While clay particles impeded exudate recovery, the glass bead set-up allowed to uncover dynamic exudate shifts during bacterial community establishment. With this system, a transient increase of glucosinolates upon root colonisation with initially dominant Pseudomonas species was detected. Overall, the comparison showed that only the glass bead-based semi-hydroponic system was suitable for the simultaneous study of root microbiome and exudate dynamics.
The raw data of this study correspond to root exudates, root and shoot tissue extracts collected in a 2-week time series following metabolome responses to SynCom inoculation of plants grown in glass-microcosms.
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