At the same time, the metabolites were identified by searching database, and the main databases were the HMDB (http://www.hmdb.ca/), Metlin ( https://metlin.scripps.edu/) and the self-compiled Majorbio Database (MJDB) of Majorbio Biotechnology Co., Ltd. (Shanghai, China).
"],"repository":["MetaboLights"],"study_status":["Public"],"ptm_modification":[""],"instrument_platform":["Liquid Chromatography MS - alternating - reverse-phase"],"chromatography_protocol":["The LC-MS/MS analysis of sample was conducted on a Thermo UHPLC-Q Exactive HF-X system equipped with an ACQUITY HSS T3 column (100 mm × 2.1 mm i.d., 1.8 μm; Waters, USA) at Majorbio Bio-Pharm Technology Co. Ltd. (Shanghai, China). The mobile phases consisted of 0.1% formic acid in water:acetonitrile (95:5, v/v) (solvent A) and 0.1% formic acid in acetonitrile:isopropanol:water (47.5:47.5, v/v) (solvent B). The flow rate was 0.40 mL/min and the column temperature was 40℃. The injection volume was 3 μL.
"],"publication":["Rapeseed root phospholipid metabolism orchestrates low phosphorus-induced microbiome changes and the interaction with beneficial Massilia."],"submitter_affiliation":["Huazhong Agricultural University"],"submitter_name":["xiaoxiao dong"],"organism_part":["Supernatent","root"],"technology_type":["mass spectrometry assay"],"disease":[""],"extraction_protocol":["Solid sample:
50 mg solid sample was added to a 2 mL centrifuge tube and a 6 mm diameter grinding bead was added. 400 μL of extraction solution (methanol: water = 4:1 (v:v)) containing 0.02 mg/mL of internal standard (L-2-chlorophenylalanine) was used for metabolite extraction. Samples were ground by the Wonbio-96c ( Shanghai wanbo biotechnology co., LTD) frozen tissue grinder for 6 min (-10°C, 50 Hz), followed by low-temperature ultrasonic extraction for 30 min (5°C, 40 kHz). The samples were left at -20°C for 30 min, centrifuged for 15 min (4°C, 13000 g), and the supernatant was transferred to the injection vial for LC-MS/MS analysis.
Liquid sample:
100 μL liquid sample was added to a 1.5 mL centrifuge tube with 400 μL solution (acetonitrile: methanol = 1:1(v:v)) containing 0.02 mg/mL internal standard (L-2-chlorophenylalanine) to extract metabolites.The samples were mixed by vortex for 30 s and low-temperature sonicated for 30 min (5°C, 40 KHz). The samples were placed at -20°C for 30 min to precipitate the proteins.Then the samples were centrifuged for 15 min (4°C, 13000 g).The supernatant was removed and blown dry under nitrogen. The sample was then re-solubilized with 100 µL solution (acetonitrile: water = 1:1) and extracted by low-temperature ultrasonication for 5 min (5°C, 40 KHz), followed by centrifugation at 13000 g and 4°C for 10 min.The supernatant was transferred to sample vials for LC-MS/MS analysis.
"],"organism":["Massilia arvalis","Massilia phosphatilytica","Brassica napus"],"full_dataset_link":["https://www.ebi.ac.uk/metabolights/MTBLS14659"],"author":["xiaoxiao dong. Huazhong Agricultural University. 15626204726@163.com."],"data_transformation_protocol":["The UHPLC-MS raw data were converted into the common format by Progenesis QI software (Waters, Milford, USA) through baseline filtering, peak identification, peak integral, retention time correction, and peak alignment. Then, the data matrix containing sample names, m/z, retention time and peak intensities was exported for further analyses.
"],"study_factor":["Treatment"],"submitter_email":["15626204726@163.com"],"sample_collection_protocol":["Root samples from 4 weeks old juvenile Brassica napus (rapeseed) plants and the supernatant of the cultured bacterial solution were subjected to metabolomic profiling.
"],"omics_type":["Metabolomics"],"study_design":["Metabolomics","Supernatent","targeted analysis","untargeted metabolite profiling","Thermo Scientific Vanquish UHPLC System","Rhizosphere","Phospholipase","rapeseed","Massilia arvalis","Thermo Scientific Q Exactive HF-X","Massilia phosphatilytica","root","Brassica napus","experimental blank","Thermo Scientific Q Exactive HF"],"curator_keywords":["Metabolomics","Supernatent","targeted analysis","untargeted metabolite profiling","Thermo Scientific Vanquish UHPLC System","Rhizosphere","Phospholipase","rapeseed","Massilia arvalis","Thermo Scientific Q Exactive HF-X","Massilia phosphatilytica","root","Brassica napus","experimental blank","Thermo Scientific Q Exactive HF"],"mass_spectrometry_protocol":["The mass spectrometric data were collected using a Thermo UHPLC-Q Exactive HF-X Mass Spectrometer equipped with an electrospray ionization (ESI) source operating in positive mode and negative mode. The optimal conditions were set as followed: Aux gas heating temperature at 425℃; Capillary temp at 325℃; sheath gas flow rate at 50 psi; Aux gas flow rate at 13 psi; ion-spray voltage floating (ISVF) at -3500V in negative mode and 3500V in positive mode, respectively; Normalized collision energy , 20-40-60 eV rolling for MS/MS. Full MS resolution was 60000, and MS/MS resolution was 7500. Data acquisition was performed with the Data Dependent Acquisition (DDA) mode. The detection was carried out over a mass range of 70-1050 m/z.
"],"metabolite_name":["4-Hydroxyandrostenedione Glucuronide","Laninamivir","(+)-Gamma-Hydroxy-L-Homoarginine","2-(3-Indolyl)Propionic Acid","Pro-Ser-Glu","Delta-Hydroxylysylnorleucine","Stercobilinogen","Riboflavin","Piceatannol","Cyclo(Arg-Gly-Asp-D-Phe-Val)","2-Methylene-4-Oxopentanedioic Acid","N(6)-6(R,S)-Lipoyl-L-Lysine","Asp-Glu-Leu","2-Oxoadipic Acid","Leu-Glu-Ile","4-Piperidinecarboxamide","Prednisolone Metasulfobenzoate","Trp-Val","L-Histidine","(2-Chlorophenyl)-Thiomorpholin-4-Ylmethanone","Tebipenem","V-9402","3H-Indole-3-Propanoic Acid,A-Amino-","Lys-Val","Theophylline One","Gabazine","Fluridone","N-(3,5-Dimethylphenyl)-4-Methylthieno[3,2-B]Pyrrole-5-Carboxamide","4-Amino-1-Butanol","3-Deoxy-D-Manno-Octulosonate 8-Phosphate","Citrulline","Imazapyr","Imidazolepropionic Acid","N-Formyl-L-Methionine","2-Hydroxy-3-Methyl-4H-Pyran-4-One O-(6E-Cinnamoyl-B-D-Glucoside)","2-Hydroxy-2-Methylbutyric Acid","Dihydroergotamine","Epicylindrospermopsin","8-Acetoxy-4'-Methoxypinoresinol 4-Glucoside","Flumioxazin","(2R,3R)-Pinobanksin","16-Deacetylgeyerline","Glu-Thr-Pro","1-[2-(4-Pyrimidin-2-Ylpiperazin-1-Yl)Sulfonylethyl]-3-Thiophen-2-Ylurea","Asn-Ile","Phylanthoside","Ile-Val-Val","5-(N,N-Dimethyl)Amiloride Hydrochloride","Lpe(20:4)","Gingerglycolipid A","Deacetylchloronectrin","4-(4-Tert-Butyl-1,3-Thiazol-2-Yl)-N-(Cyclohexylmethyl)Thiophene-2-Sulfonamide","S-Methoprene","Hydroxypropyl Methylcellulose","Cyanidin 3-[6-(6-Sinapylglucosyl)-2-Xylosylgalactoside]","(+/-)-Tryptophan","N-[(2,5-Dimethoxyphenyl)Methyl]-2-(3,3,5-Trimethyl-2-Oxoindol-1-Yl)Acetamide","4-Acetamidobenzenesulfonamide","Azaperol","4-(Hydroxymethyl)-3-(1-Hydroxy-7-Methyloctyl)Oxolan-2-One","N-(3-(3-Hydroxy-4-Methoxyphenyl)Propyl)-L-Alpha-Aspartyl-L-Phenylalanine","N-Cyclopentyl-2-Ethyl-6-Methylimidazo[2,1-B][1,3,4]Thiadiazole-5-Sulfonamide","2-Furoic Acid","Fluocinolone Acetonide","Furan-2-Yl-[3-[4-(3-Methyl-1,2,4-Oxadiazol-5-Yl)Phenoxy]Azetidin-1-Yl]Methanone","1-(3-Fluorophenyl)-3-(2-Methyl-5-Nitrophenyl)Urea","Flavin Mononucleotide","2,6-Dimethylpyrazine","Hypophyllanthin","2-Butenal","His Val Thr Glu Glu","4-Methylcatechol","Gamma-Glutamylglutamic Acid","Asn-Asp-Leu","Bisnoryangonin","Gly Val Phe","Gamma-Glutamyltyrosine","Didesmethyl Doxepin","Glutaric Acid","Oxiracetam","4-Amino-1-Piperidinecarboxylic Acid","Glycitein","Midecamycin Acetate","Diglykokoll","Astringin","Hophe-Lys-Oh","Met-Glu","Leu Met Lys Asp Gly","His-Val","Temazepam","Ala Leu","Gly Leu Cys","Fluticasone Propimonate","1-Hexadecanoyl-Sn-Glycero-3-Phosphoethanolamine","Lps(18:1)","Alizarin 1-Methyl Ether","Trp Tyr His","Etodolac","(R)-Laudanidine","Val Leu","3-(2-Methoxyethyl)-5-(1-Pyridin-3-Ylsulfonylazetidin-3-Yl)-1,2,4-Oxadiazole","2-Amino-5-Methyl-4-Phenyl-Thiazole","Neoandrographolide","Indole-3-Acetyl-Leucine","2-Oxobutyric Acid","Tetrahydrofolyl-[Glu](2)","Ala Pro Gly","(2S,2'S)-Pyrosaccharopine","Azimilide","Trp-Ile","1,3-Dimethylthieno[2,3-C]Pyrazole-5-Carbohydrazide","O-Cresol","Thr Val Tyr Lys Gly","N-(2,4-Dimethoxyphenyl)-5,6,7,8-Tetrahydroimidazo[1,2-A]Pyridine-2-Carboxamide","Bipindogulomethyloside","Triacanthine","Senecionine N-Oxide","(1-(5-Fluoropentyl)-1H-Indol-3-Yl)(4-Methylnaphthalen-1-Yl)Methanone","4,5-Seco-Dopa","Glycylhydroxyproline","4-Hydroxyphenyllactic Acid","(2R,3Z)-Phycocyanobilin","Gly-Ile","Thr-Ala-Leu","Isorhynchophylline","Amphibine H","Fumonisin B1","Noroxyhydrastinine","Hydroxymethyl Hydrogen Carbonate","Rpr123142","1-[2-[1-(Benzenesulfonyl)Piperidin-4-Yl]Ethyl]-3-(4-Ethoxyphenyl)Urea","His-Asn-Tyr","Glu-Asp-Arg","Pindolol","Lymecycline","1-[5-Amino-3-(3,4-Dimethylphenyl)-1,2,4-Triazol-1-Yl]Propan-1-One","(2-Oxo-2,3-Dihydro-1H-Indol-3-Yl)Acetic Acid","N-(2,4-Dimethoxyphenyl)-1-(6-Oxo-1-Propylpyridazin-4-Yl)Piperidine-4-Carboxamide","Paramethadione","Puromycin","Butyric Acid","3Alpha-Acetoxydihydrodeoxygedunin","Fumonisin A1","Glycyllysylarginine","Asp-Gly","Tyr-Glu-Ser","Dg(Pgf2Alpha/2:0/0:0)","Alpha-Ionone","4'-O-Methylkanzonol W","Dl-Acetylcarnitine","Thiamine","Ile-Gly","Phenylalanyl-Prolyl-Arginine Nitrile","Fumaric Acid","2-Hydroxyglutaric Acid Lactone","N6-Phenylisopropyladenosine","Methyl (3X,10R)-Dihydroxy-11-Dodecene-6,8-Diynoate 10-Glucoside","Etoposide","(S)-2-Methyl-1-Butanol O-Beta-D-Glucopyranoside","Gly Pro Ile","2-Propylglutaric Acid","Trp-Phe-Oh","His-Ile","1-(3-Carboxypropylcarbamoyl)-5-Fluorouracil","2-(3-Carboxy-3-Aminopropyl)-L-Histidine","Glu-Glu-Leu","Daucic Acid","Myricanol 5-Laminaribioside","Gingerenone C","Betonicine","Pkg Inhibitor","1,2-Dihydronaphthalene-1,2-Diol","Daidzin","Glu-Thr-Phe","4-Hydroxyphenylacetic Acid","Temocillin","S(+)-Raclopride L-Tartrate","N-(1-Benzylpiperidin-4-Yl)-3-[3-(4-Fluorophenyl)-1,2-Oxazol-4-Yl]Propanamide","Trp-Gly","4-Aminobutyraldehyde","Clitocine","4-Chloro-2-Nitrobenzylalcohol","1'-(2-Methoxyacetyl)Spiro[3H-1,3-Benzoxazine-2,4'-Piperidine]-4-One","3'-O-Methylguanosine","Eperisone","Arg Cys Tyr","Aloesol 7-Glucoside","Arotinolol","N-(4-Methoxy-7-Methyl-1,3-Benzothiazol-2-Yl)-3-Methyl-1,2-Oxazole-5-Carboxamide","[1-(3,4-Dimethylphenyl)Triazol-4-Yl]-Thiomorpholin-4-Ylmethanone","Atractyligenin 2-Glucuronide","2-[(2-Hydroxy-3-Methylbutanoyl)Amino]-4-Methylpentanoic Acid","Arginylphenylalanine","3'-Deamino-3'-(2-Methoxy-4-Morpholinyl)Doxorubicin","D-Glucurono-6,3-Lactone","6-Pentyl-1,4-Dioxan-2-One","Endothal","5-Hydroxylysinonorleucine","Spionoside B","L-2-Amino-4-Methylenepentanedioic Acid","Sesamose","Lys-Leu","Methyl 2-[(3-Formamido-2-Hydroxybenzoyl)Amino]-3-Hydroxypropanoate","Libenzapril","Telmisartan","N-(1,3-Benzothiazol-2-Yl)-1-(3-Fluorobenzoyl)Piperidine-4-Carboxamide","Ascorbic Acid","N-[2-(3,5-Dioxopiperazino)Propyl]-N-(2-Amino-2-Oxoethyl)Glycine","3-Hydroxycinnamic Acid","Phenylethylmalonamide","Trp-Glu-Ser","Sclareolide","Sucrose, 1-Laurate","Thr-Ala-Tyr","L-Allysine Ethylene Acetal","Leukotriene-F4","Gln-Ala-Tyr","Pg(Pgf1Alpha/A-21:0)","N2-(1-Carboxyethyl)-2'-Deoxyguanosine","Bms-275183","Clindamycin","Kaltostat","Cyclocalopin D","2-Isopropylmalic Acid","Hydroxyprolylhydroxyproline","Nivalenol","3-(1-Pyrazolyl)-Alanine","Sabeluzole","Rifampicin","D-Pyroglutamic Acid","3-Coumaric Acid","N-(4-Oxopentyl)Acetamide","Sl(12:2_O/12:1_O)","Dodecadienoic Acid","Fostemsavir","Creatinine","D-Pantethine","Valnemulin","L-4-Hydroxyglutamate Semialdehyde","2-[2-(Methylthio)Benzoyl]Benzoic Acid","3-Hydroxy-3-Methylglutaric Methyl Ester","Lichenin","N-[4-(4-Methylphenoxy)Phenyl]-2-[2-(2-Oxopyrrolidin-1-Yl)Anilino]Acetamide","Ajugose","N-Acetyl-L-Arginine","Gln-Val","2-Aminoheptanedioic Acid","Foliandrin","Medicanine","Glu-Glu-Ile","Cilengitide","Antiarrhythmic Peptide","Lys-Phe-Tyr","3-[(E)-Prop-1-Enyl]Pentanedioic Acid","Gonyautoxin I","Myricanol 5-(6-Galloylglucoside)","3,5-Difluoro-N-[1-(3-Methyl-1,2,4-Oxadiazol-5-Yl)Cyclohexyl]Benzamide","L-Prolinamide, Glycyl-N-(4-Methyl-2-Oxo-2H-1-Benzopyran-7-Yl)-","Jwh 081 5-Methoxynaphthyl Isomer","Hydroxylated N-Acetyl Desmethyl Frovatriptan","Dialdehyde","Isofebrifugine","5-Methyldeoxycytidine","2-[(3-Methoxyphenyl)Methylamino]-4-Propan-2-Ylpyrimidine-5-Carboxylic Acid","7-(4-Fluorophenyl)-2-Phenylimidazo[1,2-A]Pyrazin-8-One","Tyrosyl-Lysine","Abeado","Pyroglutamyl-Histidyl-Glycine","Gibberellin A8-Catabolite","Stachyose","Pro Phe","Ile-Asp-Asp","Pipecolic Acid","N-Benzhydryl-4-[2-(Thiophene-3-Carbonylamino)Ethyl]Piperazine-1-Carboxamide","2-[1-(2-Fluorobenzoyl)Piperidin-4-Yl]-6-Thiophen-3-Ylpyridazin-3-One","Met-Glu-Leu","4-Acetylzearalenone","(4-Ethoxyphenyl)-[3-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Piperidin-1-Yl]Methanone","Pro-Ser","(2E,4E)-2,7-Dimethylocta-2,4-Dienedioic Acid","3-Sulfodeoxycholic Acid","(S)-A-Amino-2,5-Dihydro-5-Oxo-4-Isoxazolepropanoic Acid N2-Glucoside","Elaterinide","Naloxonazine","Lumiflavin","Atorvastatin","L-Lysine","Muramic Acid","6A, 3'-P-Dihydroxypaclitaxel","Ganosporelactone A","Galactosylhydroxylysine","Itaconic Acid","4,5-Dihydroorotic Acid","Ethyl 2-Cyano-3-[(6-Methoxy-8-Quinolyl)Amino]Acrylate","Genistein","N-(9-Pentofuranosyl-9H-Purin-6-Yl)Aspartic Acid","Phe Gly","2-Methylcitric Acid","Glu-Val-Tyr","Tyr-Thr-Phe","Phenylpyruvic Acid","Parasorbic Acid","Endomorphin-1","Saphenic Acid Methyl Ester","Asp Leu","Catechin 7-Glucoside","Tyr-Ser-Thr","Tyr Ser Val","Tyrosyl-Leucine","2-(4-Chlorophenyl)-5-[(4-Fluorophenyl)Methyl]Pyrazolo[1,5-A]Pyrazin-4-One","Yunaconitine","Spirostane-2H, + 1O, O-Hex-Dhex","Rilmakalim","Isoleucyllysine","17-Dimethylaminogeldanamycin","Isoline","Neoacrimarine G","Retaspimycin","22-Hydroxydocosanoic Acid","6-Hydroxy-1,5-Dimethoxy-Xanthone","Trp-Thr","Deoxycytidine Monophosphate","Ala-Pro-Lys","Cellulase","Apc","Ttatpn","Asn-Glu-Leu","2-Hydroxybenzonitrile","(E)-Non-3-Enedioic Acid","2-Hydroxypropyl Methacrylamide","Goyaglycoside C","Glu-Pro","Epothilone B","Taurine","Asp Ile Gly","Dermatan L-Iduronate","20-Hydroxy-Leukotriene E4","Zalcitabine","1-[(4-Methoxyphenyl)Methyl]-5-Propyltriazole-4-Carboxylic Acid","5-Formiminotetrahydrofolic Acid","Methyl 6-Methoxy-4-[(3-Methoxyphenyl)Methoxy]Quinoline-2-Carboxylate","Sescandelin B","1-[4-[4-(2,5-Dimethylphenyl)-1,3-Oxazol-2-Yl]Phenyl]-3-(2-Phenylethyl)Urea","Pegaptanib","Trp Lys Lys","Ala-Leu-Ile","Naepaine","2-{2-Oxo-2-[(2-Oxo-3-Azepanyl)Amino]Ethoxy}Acetic Acid","Germacrone","6-Oxopiperidine-2-Carboxylic Acid","Thyrotropin Releasing Hormone","Aminodeoxykanamycin","Gly-Arg","N-Pyridin-2-Yl-4-Thiophen-2-Yloxane-4-Carboxamide","2-Cyclopropyl-1-[1-(3-Methoxyphenyl)Sulfonylpyrrolidin-3-Yl]-5-Methylimidazole","Andrographolide","D-Glucosaminide","D-Sorbitol","Gly-Pro-Gly-Arg-Ala-Phe","Ertugliflozin","N-Alpha-Acetyl-L-Citrulline","Sipatrigine","Cofaryloside","3-Hydroxy-5,5,8A-Trimethyl-3,4,4A,6,7,8-Hexahydronaphthalene-2-Carboxylic Acid","2-Chloro-N-[2-(1-Ethylpyrrolo[2,3-B]Pyridin-3-Yl)Ethyl]-5-Fluorobenzamide","N-[1-(4-Methoxy-6-Oxopyran-2-Yl)-2-Methylpropyl]Formamide","Cetirizine","Porphobilinogen","Asp Ile","3-Ethyl-2-[1-(4-Propan-2-Ylphenyl)Sulfonylpyrrolidin-3-Yl]Imidazo[4,5-B]Pyridine","1-Methyl-N-(3-Oxo-1H-2-Benzofuran-5-Yl)Imidazole-4-Sulfonamide","Phenethyl 6-Galloylglucoside","N-Allyl-N'-{4-[3,5-Bis(Trifluoromethyl)Phenoxy]Phenyl}Thiourea","Luprostiol","Cyclo(Aspartylleucylthreonylvalyltyrosylphenylalanylglycyl)","2-Benzylsuccinic Acid","N-[2-(4-Fluorophenyl)-7-Methylimidazo[1,2-A]Pyridin-3-Yl]-2-Phenylbutanamide","Ile-Tyr","Mergepta","[D-Met2, Pro5]-Enkephalinamide","(+/-)-2-Hydroxy-4-(Methylthio)Butanoic Acid","Lys Ala Val","Gnf-5","1-Methylguanosine","Tuliposide B","N2-Acetyl-L-Ornithine","N-(1-Deoxy-1-Fructosyl)Alanine","Neuromedin C 1-8","L-Histidinol","Asn Leu His","3-Butyl-1-(Hydroxymethyl)-1-(4-Methylphenyl)Sulfonylurea","Indoxyl Glucuronide","Roquefortine","Tyrosyl-Glycyl-Glycyl-Phenylalanyl","Gly-Val-Leu","Betamethasone 17-Benzoate","Isopropylmaleic Acid","3-(Dimethylamino)-N-[1-(5-Pyrrolidin-1-Ylpyrimidin-2-Yl)Pyrazol-4-Yl]Benzamide","Astragaloside Iii","Lpe(16:1)","3-(3,4-Dimethylphenyl)Sulfonyl-4-(4-Ethylpiperazin-1-Yl)-6,7-Dimethoxyquinoline","5-(1,2-Dihydroxypropan-2-Yl)-4-Methylbicyclo[3.1.0]Hexan-2-One","Rebaudioside B","Licofelone","Guanidylic Acid (Guanosine Monophosphate)","Trp-Lys-Tyr-Met-Val-D-Met","2-(3-Carboxy-3-(Trimethylammonio)Propyl)-L-Histidine","N6-Galacturonyl-L-Lysine","4-{[3-(Diethylamino)Propyl]Amino}-4-Oxobut-2-Enoic Acid","5,9,11-Trihydroxyprosta-6E,14Z-Dien-1-Oate","5-Methoxy-3-(1,2,3,6-Tetrahydropyridin-4-Yl)-1H-Indole","Isoliquiritin","Val Gly Val","8-Propanoylneosolaniol","4-(3-Nitro-2-Pyridyl)Thiomorpholine","Aromadendrin 3-Rhamnoside","5-Hydroxytryptophol Glucuronide","2-Amino-4-[Carbamimidoyl(Methyl)Amino]Butanoic Acid","2-(4-(2-Carboxyethyl)Phenethylamino)-5'-N-Ethylcarboxamidoadenosine","3-Methyladipic Acid","4-Hydroxy-3-Methylbenzoic Acid","Ergokryptine","Lpe(16:0)","Tyr Asp","Cycloleucine","Levulinic Acid","Bisindolylmaleimide I","Ile Lys Ser","4-Guanidinobutanoic Acid","Gln Pro Glu","His His Ser Lys His","Plumieride","2-(3-Morpholin-4-Ylpropyl)-6-Nitrobenzo[De]Isoquinoline-1,3-Dione","Aureomycin","Elafibranor","Val-Leu-Pro-Val-Pro","Tryptamine","Pseudoecgonine","Arg-Pro-Pro-Gly-Phe-Ser-Pro","Asn Gly Ser Pro Ser","3-Benzyl-5-(6-Carboxyhexyl)-1-(2-Cyclohexyl-2-Hydroxyethylamino)Hydantoin","(3B,20R,22R)-3,20,27-Trihydroxy-1-Oxowitha-5,24-Dienolide 3-Glucoside","N-Benzyl-1-(4-Ethoxyphenyl)Sulfonylpiperidine-3-Carboxamide","Glucuronolactone","(S)-5-Amino-3-Oxohexanoate","Maltotetraose","Isofloxythepin","N-Succinyl-L,L-2,6-Diaminopimelate","Glu-Leu-Leu","Rimegepant","Pro Gln Leu","Idp","2-[[2-[(2-Aminoacetyl)Amino]-3-Phenylpropanoyl]Amino]Pentanedioic Acid","3-Methyluridine","Tautomycin","Met Glu Ile","Tricrocin","Canarigenin 3-[Glucosyl-(1->4)-6-Deoxy-Alloside]","Fluorohydrocortisone","6,7-Didehydrofevicordin F 3-[Glucosyl-(1->6)-Glucoside]","3-[(E)-4-(1H-Indol-6-Yl)-2-Methylbut-3-En-2-Yl]-6-(3-Methylbut-2-Enyl)-1H-Indole","Desmethyldeschlorobenzoyl Indomethacin","16Beta-Oh-Dhea Sulfate","Met-Met-Lys","Deoxycholic Acid 3-Glucuronide","N-[(2-Methoxyphenyl)Methyl]-2-(2-Oxopyrrolidin-1-Yl)Acetamide","Menisdaurin D","Sanshodiol","Fluorescein 5-Maleimide","1-(2-Hydroxyethoxy)Methyl-5-Methyluracil","4-Hydroxy-6-Oxo-5-Pentylpyran-2-Carboxylic Acid","8-Epiloganic Acid","3-Indoleacrylic Acid","Hypoxanthine","Linotroban","N1-(4-Cyclohexylphenyl)-2-[(4-Methylphenyl)Thio]Acetamide","Pentaerythritol Triacrylate","3'-Amino-3'-Deoxythimidine","Trp-Phe","Beta-Funaltrexamine","(+/-)-Strobide B","Nnal-N-Glucuronide","5,10-Methylene-Thf","Kynurenic Acid","Alpha-[3-(Nitrosoamino)Propyl]-3-Pyridinemethanol","1-[2-[4,4-Difluoro-3-(Methoxymethyl)Piperidin-1-Yl]-2-Oxoethyl]Pyrrolidin-2-One","2-S-Glutathionyl Acetate","Peonidin 3-Sophoroside 5-Glucoside","Isoleucine Glutamate","Ser His Lys","3-Chloro-N-(1-Methyl-5-Morpholin-4-Yl-6-Oxopyridazin-4-Yl)Benzamide","5-Dehydroquinic Acid","Ethyl Aconitate","Trp-His-Tyr","Pyrrole-2-Carboxylic Acid","Fructose-6-Phosphate Lactate","6-Azauridine","Cinncassiol D1 Glucoside","Arenaine","3-Deoxyglucosone","Nemifitide","Tyrosyl-Alanyl-Glycine","Glu-Lys-Leu","Indole-3-Lactic Acid","N-[2-(3-Propan-2-Ylimidazo[4,5-B]Pyridin-2-Yl)Ethyl]-2-Thiophen-3-Ylacetamide","Theogallin","Citraconic Acid","Asn Leu","Shanzhiside","(-)-Bremazocine","Nicotine Glucuronide","Asn-Ser-Gln","Glu-Val-Phe","Sapidolide A","Verbascose","Pro-Thr-Tyr","3-(3-Indolyl)-2-Oxopropanoic Acid","Alpha-Hydroxy-Tamoxifen-O-Glucuronide","3-Hydroxynona-4,7-Dienoylcarnitine","Lumichrome","Alpha-Cyano-3-Hydroxycinnamic Acid","L-(+)-Citrulline","Leu-Ile","N-[3-(4-Chloroanilino)-1H-1,2,4-Triazol-5-Yl]-N'-Isopropylurea","Propan-2-Yl N-Phenylcarbamate","4-Formyl Indole","Glycocholenate Sulfate","Trans-Piceid","Chromafenozide","Trp-Leu","Bicine","5,6-Dihydroxyprostaglandin F1A","Pc-M6","Lpe(18:1)","Cucurbitacin A","2-N-Propyl-4-Oxopentanoic Acid","Dodecyl-Beta-D-Maltoside","L-Beta-Aspartyl-L-Phenylalanine","Aconine","Lysyl-Gamma-Glutamate","Gly-Val","Pa(6 Keto-Pgf1Alpha/2:0)","S-(11-Oh-9-Deoxy-Delta9,12-Pgd2)-Glutathione","Glu-Gly-Leu","N-(3,4-Difluorophenyl)-2-Methyl-7-Oxoazepane-2-Carboxamide","L-Methionine","N-Acetyl-D-Alloisoleucine","Melezitose","Val-Pro-Leu","Glycerophospho-N-Arachidonoyl Ethanolamine","3-Hydroxyglutaric Acid","Guanidinosuccinic Acid","2-Hydroxy-3-Methylbutyric Acid","Tigecycline","L-Beta-Aspartyl-L-Leucine","Fluphenazine Decanoate","Fucose","12B-O-[Deca-2Z,4E,7Z-Trienoyl]-13-Isobutyroyloxy-4B-Deoxyphorbol","N-Lactoylleucine","Ichangin 4-Glucoside","Dapt","Methyl 3,8-Dihydroxy-9-Oxoxanthene-1-Carboxylate","N-Tert-Butyl-5-Fluoro-3-Methoxy-1-Benzothiophene-2-Carboxamide","Hv-Ncc-1","Plazomicin","Ureidosuccinic Acid","Hycanthone","Trilostane","2-Methyl-5-Piperidin-1-Ylsulfonyl-6-Propan-2-Ylimidazo[2,1-B][1,3,4]Thiadiazole","Glu-Leu-Ser","10,11-Dihydro-20-Trihydroxy-Leukotriene B4","4-Hydroxytamoxifen-O-Glucuronide","Diflucortolone","2-Aminooctanedioic Acid","N-(2-Hydroxy-3-Methoxy-2-Methylpropyl)-3-Methoxy-1-Methylpyrazole-4-Carboxamide","3-O-Beta-D-Galactopyranosyl-L-Arabinose","Ala Leu Gly Ile Ser","6-O-Oleuropeoylsucrose","12S-Hht","?-Secretase Inhibitor Iv","Nizatidine","3-Hydroxydecanoic Acid","Lpe(18:3)","Arg-Leu","Flavine Mononucleotide (Fmn)","Gly Leu Ala","Shikimic Acid","Glaucarubin","Protocatechuic Aldehyde","Ser-Ile-Leu","N-Hydroxy-L-Tryptophan","2-(2-Fluorophenyl)-6-Methylquinoline-4-Carboxamide","Glutaric Anhydride","Val-Val-Leu","Oxyfluorfen","Glu-Gly-Arg","6,7-Dimethoxy-1,2,3,4-Tetrahydroisoquinoline-3-Carboxylic Acid","Moxidectin","3-(1-Hydroxymethyl-1-Propenyl)Pentanedioic Acid","Asn-Phe-Lys","3-Chloro-N,4-Dimethyl-N-(Oxan-4-Ylmethyl)Benzenesulfonamide","Gemfibrozil 1-O-Beta-Glucuronide","4,7-Dioxoheptanoic Acid","3'-Azido-3'-Deoxy-5'-O-Beta-D-Glucopyranuronosylthymidine","Citreoviridinol A1","4-[2-(Hydroxymethyl)-4,5-Dimethoxyphenyl]-2,3-Dihydro-1H-Pyrazol-3-One","1-(4-Methoxyphenyl)-3-[(2-Oxo-1,3,4,5,6,7-Hexahydroquinolin-4A-Yl)Methyl]Urea","Indicine-N-Oxide","3-Methyl-3-Butenyl Apiosyl-(1->6)-Glucoside","Ala Leu Leu","4-Amino-5-Hydroxymethyl-2-Methylpyrimidine","Antramycin","Pa(6 Keto-Pgf1Alpha/18:3(6Z,9Z,12Z))","Fleroxacin","Pro-Tyr","Digoxigenin Bisdigitoxoside","Brassica Napus Non-Fluorescent Chlorophyll Catabolite 3","Fluorocarazolol","Cyclohexanecarboxylic Acid","Lyciumoside Viii","3,4-Dhpea-Ea","3-Hydroxybenzyl Alcohol Glucoside","N5-Formyl-N5-Hydroxy-L-Ornithine","Methionyl-Leucine","Pe(O-14:1/2:0)","N-T-Boc-Leu-Gly-Arg P-Nitroanilide","1-(4-Cyclopropylsulfonylpiperazin-1-Yl)-2-Thiophen-2-Ylethanone","Gly-Glu-Ile","Tyrosyl-Arginine","6-Thioguanosine Monophosphate","Palmitoyl Ara-C","5-Acetamido-4-Oxohexanoic Acid","Tetrapeptide","[4-(1-Benzylpyrazolo[3,4-D]Pyrimidin-4-Yl)Piperazin-1-Yl]-(Furan-2-Yl)Methanone","Asn-Thr-Asn","Val-Ala-Ile","Dl-Arginine","Ronacaleret","N,N'-Bis[3-(2-Chlorophenyl)-5-Methylisoxazol-4-Yl]Urea","Glu His Ala","Gamma-L-Glutamyl-L-Pipecolic Acid","Pro Trp Gln","Tyr Thr Trp","5Alpha-Ethoxy-6Beta-Hydroxy-5,6-Dihydrophysalin B","1-Benzyl-N-(4-Chlorophenyl)-4-Hydroxy-2-Oxo-1,8-Naphthyridine-3-Carboxamide","Zolmitriptan N-Oxide","N-Docosahexaenoyl Phenylalanine","2-Chloro-6-Fluoro-N-[[1-(Thiophen-2-Ylmethyl)Piperidin-4-Yl]Methyl]Benzamide","Tetroxoprim","Etiracetam","Taribavirin","N'-(2-Cyano-3-Fluoro-N-Methylanilino)Ethanimidamide","2-Mercaptobenzothiazole","[(S)-1-Carboxy-2-Phenyl-Ethyl]-Carbamoyl-Arg-Val-Arg-Aldehyde","Cyclosquamosin B","2-(1,2,3,4-Tetrahydroxybutyl)-6-(2,3,4-Trihydroxybutyl)Pyrazine","5-Hydroxy-N-Formylkynurenine","N-[(3A,5B,7A)-3-Hydroxy-24-Oxo-7-(Sulfooxy)Cholan-24-Yl]-Glycine","Shexcer(26:2_3O)","Thr-Ser-Tyr","Pyruvic Acid","3-Ethoxypropanoic Acid","Diacetylsongorine","Arg-Met-His","Lpa(18:1)","Gly-Asp","4-Fluoro-N-(8-Methyl-[1,3]Dioxolo[4,5-G]Quinazolin-6-Yl)Benzamide","Dolichyl B-D-Glucosyl Phosphate","1-(4-Trifluoromethylphenyl)Piperazine","Leu Ser Leu Thr Gln","Monoethylhexyl Phthalic Acid","Pa(Lte4/I-12:0)","Oxazepam","Gamma-Glutamyl-Beta-Aminopropiononitrile","Asp-Thr-Ile","Cay10633","N6-Carbamoyl-L-Threonyladenosine","15(S)-Fluprostenol","Mevalonic Acid-5P","1-[4-(4-Hydroxybenzoyl)Piperazin-1-Yl]Ethanone","Arg-Val-Ile","Fumaritine","Pomiferin","Leuphasyl","Aminofurantoin","Annoglaucin","Maltohexaose","Ala-Pro-Tyr","Lpg(16:1)","Hoduloside Vi","[3-(3-Methylimidazo[4,5-B]Pyridin-2-Yl)Pyrrolidin-1-Yl]-Thiophen-3-Ylmethanone","Oxypinnatanine","Methacycline","(4-Cyclohexylpiperazin-1-Yl)-(6-Thiophen-2-Ylpyridin-3-Yl)Methanone","1-(2,3-Dimethylpyrido[2,3-B]Pyrazin-7-Yl)Piperidine-4-Carboxylic Acid","Imidazoleacetic Acid","Russelioside B","Lubiprostone","N-(8-Amino-1-Carboxyoctyl)-Alanyl-Proline","Xmp","Biopterin","Daidzein","Glycyl-Prolyl-Glutamic Acid","Lpe(17:1)"],"additional_accession":[]},"is_claimable":false,"name":"Rapeseed root phospholipid metabolism orchestrates low phosphorus-induced microbiome changes and the interaction with beneficial Massilia","description":"Phosphorus (P) is an essential macronutrient for plant development, and the role of microorganisms in enhancing plant P acquisition has attracted increasing attention. However, the genetic factors that enable plants to shape a microbiome responsive to low-P conditions remain largely elusive. In this study, we demonstrate that phospholipid metabolism influences low-P-induced changes in the root microbiome of rapeseed. Notably, the genus Massilia is identified as a key biomarker, whose abundance is significantly regulated by phospholipase-associated genetic factors. Experimental inoculation with Massilia significantly promoted plant growth and increased membrane phospholipid levels. Furthermore, phospholipids produced by Massilia serve as bioavailable P sources for the host plant, while the plant-derived phospholipid metabolite glyceric acid functions as a carbon source for the bacterium. These findings provide genetic insights into how plant phospholipid metabolism, mediated by phospholipases, orchestrates root microbial communities under low-P stress. This study also highlights the potential of Massilia as a bioinoculant to improve crop resilience in P-deficient soils.","dates":{"publication":"2026-06-02","submission":"2026-06-02"},"accession":"MTBLS14659","cross_references":{"HMDB":["HMDB0013682","HMDB0259191","HMDB0028721","HMDB0028989","HMDB0033623","HMDB0028892","HMDB0014341","HMDB0241002","HMDB0029009","HMDB0035895","HMDB0029000","HMDB0029160","HMDB0251872","HMDB0002832","HMDB0037467","HMDB0011177","HMDB0244505","HMDB0032807","HMDB0028950","HMDB0245004","HMDB0253369","HMDB0028972","HMDB0012275","HMDB0245645","HMDB0249457","HMDB0302904","HMDB0029086","HMDB0031802","HMDB0258793","HMDB0029108","HMDB0240657","HMDB0303813","HMDB0246615","HMDB0010329","HMDB0253026","HMDB0013716","HMDB0062552","HMDB0256825","HMDB0000045;PW_C000032","HMDB0247732","HMDB0000172;PW_C000112","HMDB0028825","HMDB0028804","HMDB0257155","HMDB0028912","HMDB0000288;PW_C000194","HMDB0029083","HMDB0003540;HMDB0258140","HMDB0029079","HMDB0029109","HMDB0001397","HMDB0037113","HMDB0028998","HMDB0029087","HMDB0001314","HMDB0250842","HMDB0248980","HMDB0245245","HMDB0028919","HMDB0246093","HMDB0245543","HMDB0031055","HMDB0029224","HMDB0255325","HMDB0247483","HMDB0038338","HMDB0254608","HMDB0038461","HMDB0028933","HMDB0015564","HMDB0011754","HMDB0041337","HMDB0001044","HMDB0059780","HMDB0013209","HMDB0028940","HMDB0246107","HMDB0253761","HMDB0252135","HMDB0029814","HMDB0034047","HMDB0036766","HMDB0014748;HMDB0245769","HMDB0038732","HMDB0029082","HMDB0028910","HMDB0304051","HMDB0254148","HMDB0029697;HMDB0029698;HMDB0029697;HMDB0029698","HMDB0039169","HMDB0258099","HMDB0253953","HMDB0259159","HMDB0301918","HMDB0302089","HMDB0034674","HMDB0036162","HMDB0028693","HMDB0034269","HMDB0253025","HMDB0029118","HMDB0028810","HMDB0247851","HMDB0012214","HMDB0003831","HMDB0304580","HMDB0000118;PW_C000074","HMDB0000559","HMDB0252886","HMDB0298363","HMDB0030310","HMDB0029008","HMDB0036156","HMDB0000133;PW_C000087","HMDB0248889","HMDB0014376","HMDB0258558","HMDB0032616","HMDB0028888","HMDB0031623","HMDB0011745","HMDB0030542","HMDB0255222","HMDB0062316","HMDB0030452","HMDB0252568","HMDB0028987","HMDB0124993","HMDB0251875","HMDB0249580","HMDB0258244","HMDB0028765","HMDB0028981","HMDB0030777","HMDB0003252","HMDB0002354","HMDB0006095","HMDB0029130","HMDB0250542","HMDB0040563","HMDB0029790","HMDB0304420","HMDB0253034","HMDB0030775","HMDB0037592","HMDB0060440","HMDB0249682","HMDB0040062","HMDB0028713","HMDB0034843","HMDB0029131","HMDB0028955","HMDB0029134","HMDB0247085","HMDB0028830","HMDB0031721","HMDB0028786","HMDB0060327","HMDB0003459","HMDB0256689","HMDB0012799","HMDB0033910","HMDB0028932","HMDB0036688","HMDB0304936","HMDB0028911","HMDB0010319","HMDB0255794","HMDB0246899","HMDB0000139;PW_C000090","HMDB0304043","HMDB0254890","HMDB0000153;PW_C000100","HMDB0034613","HMDB0256607","HMDB0258363","HMDB0240280","HMDB0000243;LMFA01060077;PW_C000164","HMDB0039282","HMDB0028889;HMDB0253179;HMDB0028889","HMDB0029068","HMDB0033581","HMDB0251322","HMDB0036331","HMDB0254564","HMDB0247271","HMDB0000070;HMDB0000716;HMDB0000070","HMDB0253945","HMDB0028942","HMDB0028814","HMDB0029432","HMDB0029005","HMDB0037831","HMDB0029545","HMDB0059632","HMDB0029073","HMDB0033018","HMDB0032924","HMDB0015095","HMDB0030801","HMDB0032889","HMDB0028848","HMDB0029361","HMDB0000071;PW_C000050","HMDB0038330","HMDB0035177","HMDB0260326","HMDB0034422","HMDB0029738","HMDB0000620;LMFA01170109","HMDB0004062","HMDB0011167","HMDB0258653","HMDB0028958","HMDB0038676","HMDB0011180","HMDB0246346","HMDB0251157","HMDB0061755","HMDB0011473","HMDB0000955;HMDB0259693","HMDB0029839","HMDB0029322","HMDB0004242","HMDB0003254","HMDB0243583","HMDB0243932","HMDB0004326","HMDB0028994","HMDB0039096","HMDB0012535","HMDB0240687","HMDB0000625","HMDB0035872","HMDB0060647","HMDB0028914","HMDB0034267","HMDB0000706","HMDB0059765","HMDB0250246","HMDB0246466","HMDB0036791","HMDB0259005","HMDB0035293","HMDB0002096","HMDB0011741","HMDB0116437","HMDB0253596","HMDB0302841","HMDB0000157;PW_C000102","HMDB0257345","HMDB0029106","HMDB0062198","HMDB0255302","HMDB0033983","HMDB0001013","HMDB0037197","HMDB0299205","HMDB0028738","HMDB0249229","HMDB0303053","HMDB0028717","HMDB0303184","HMDB0249462","HMDB0029838","HMDB0302470","HMDB0002284","HMDB0029064","HMDB0029135","HMDB0002302","HMDB0259044","HMDB0001069","HMDB0000177;PW_C000116","HMDB0002005;PW_C001342","HMDB0257131","HMDB0033270","HMDB0032523","HMDB0032702","HMDB0040778","HMDB0033341","HMDB0036561","HMDB0304489","HMDB0255029","HMDB0029022","HMDB0029098","HMDB0250707","HMDB0010328","HMDB0029391","HMDB0003407;LMFA12000012","HMDB0041287","HMDB0012267","HMDB0003331","HMDB0034319","HMDB0000645;PW_C000504","HMDB0002393","HMDB0029563","HMDB0060285;HMDB0245270","HMDB0028790","HMDB0248328","HMDB0000112;PW_C000071","HMDB0258059","HMDB0029093","HMDB0000072;PW_C000051","HMDB0032613","HMDB0003581","HMDB0059633","HMDB0246625","HMDB0001429;PW_C001104;PW_C097007","HMDB0060683","HMDB0028898","HMDB0242212","HMDB0094711","HMDB0007106","HMDB0034344","HMDB0028691","HMDB0036661","HMDB0244346","HMDB0253030","HMDB0028744","HMDB0061822","HMDB0028925","HMDB0166846","HMDB00146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