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/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-44.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/CSB177-13_m_g_v.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-08.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/QC12.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/QC08.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/QC12.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-46.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/Blank_end.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/QC05.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-20.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-03.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_9_cyp2c38.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/QC01.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-12.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/QC13.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_6_mtmr11.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-20.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-04_f_g_t.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_18_mtmr11.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-24_f_s_v.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/QC07.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-09_m_g_t.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-38_f_g_t.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-47.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-04.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-16.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-34_f_s_v.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/L_3_cyp2c38.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_7_neg2.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-23.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/QC04.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/QC04.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/QC04.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_12_mtmr11.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-40.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/QC04.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-28.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-36.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-32.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/QC01.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/CSB126-01.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-19.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/CSB177-34_f_s_v.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-27.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_22_cyp2d9.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/neg/CSB177-12_f_g_e.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/L_18_mtmr11.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-10_f_g_t.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-43.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/neg/CSB126-35.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/neg/L_13_neg2.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset2/pos/CSB177-12_f_g_e.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset3/pos/L_9_cyp2c38.rawftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841/FILES/RAW_FILES/dataset1/pos/QC01.rawprimaryOK200ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS14841Lipid feature identification was based on accurate mass, isotope pattern, MS/MS fragment scoring, retention time and intra-class elution pattern matching. Negative and positive mode data were aggregated. Lipids detected more than once in either the same mode or different modes were deduplicated by selecting the measurement with the highest average QC measurement and excluding the rest.MetaboLightsPublicLiquid Chromatography MS - negative - reverse-phaseLiquid Chromatography MS - positive - reverse-phaseLC separation was performed on a Vanquish UHPLC system using an ACQUITY Premier CSH C18 column, 2.1 mm x 100 mm, 1.7 um, at 65 C. The flow rate was 0.3 mL/min. Mobile phase A was water:ACN (40:60, v/v) and mobile phase B was IPA:ACN (9:1, v/v). Negative mode used 10 mM ammonium acetate and 0.1% acetic acid. Positive mode used 10 mM ammonium formate and 0.1% formic acid. The gradient was 0/15, 2.5/30, 3.2/48, 15/82, 17.5/99, 19.5/99, 20/15, 23/15 min/%B. Autosampler temperature was 4 C. Injection volume was 0.5 uL in positive mode and 3 uL in negative mode.Sex-specific regulatory and metabolic architecture of liver zonation.James ClelandBernhard DrotleffEMBL HeidelbergDKFZhepatocyte cellnot applicablelivermass spectrometry assayLipids were extracted using biphasic MTBE extraction. Samples were mixed with 80% MeOH containing internal standards, homogenized where applicable, mixed with MTBE, vortexed, incubated at -20 C, and phase separation was induced by adding water. Samples were centrifuged at 15,000g and 4 C. The upper organic phase was dried under nitrogen and reconstituted in IPA:MeOH (50:50, v/v). Extracts were vortexed, centrifuged, and transferred to analytical glass vials.Mus musculusnot applicablehttps://www.ebi.ac.uk/metabolights/MTBLS14841Bernhard Drotleff. European Molecular Biology Laboratory. bernhard.drotleff@embl.de.James Cleland. German Cancer Research Center. james.cleland@dkfz-heidelberg.de.Raw LC-MS/MS data were processed using MS-DIAL 4.9.22121870. Raw peak intensity data were normalized by total ion count of all detected analytes.Sexjames.cleland@dkfz-heidelberg.debernhard.drotleff@embl.deMurine liver tissue samples and hepatocyte cell samples were collected for bulk lipidomics analysis. Pooled quality control samples were prepared by mixing equal aliquots from each processed sample. Processed blank samples were included for background signal assessment.Metabolomicspooled quality control sampleMus musculusblanknot applicableuntargeted analysisVanquish HorizonThermo Scientific Orbitrap Exploris 240Livertissue sampleLipidomicshepatocyte cellEMBL Metabolomicscell samplepooled quality control sampleMus musculusblanknot applicableuntargeted analysisVanquish HorizonThermo Scientific Orbitrap Exploris 240Livertissue sampleLipidomicshepatocyte cellEMBL Metabolomicscell sampleLC-MS/MS analysis was performed on an Orbitrap Exploris 240 high-resolution mass spectrometer using positive and negative electrospray ionization. Full scan data were acquired at a resolving power of 120,000 over m/z 200-1700. Data-dependent MS/MS acquisition was performed at resolving power 15,000 using stepped collision energies of 25, 35 and 50%. Ion source settings were spray voltage 3250 V in positive mode and -3000 V in negative mode, sheath gas 45 psi, auxiliary gas 15 psi, sweep gas 0 psi, ion transfer tube temperature 300 C and vaporizer temperature 275 C.falseLipidomic analysis of hepatic sexual dimorphism (MS (MTBLS))To comprehensively characterise sex differences in hepatic lipid metabolism, we performed bulk and spatial lipidomics on male and female mouse livers.2026-06-242026-06-23MTBLS14841