<HashMap><database>panorama</database><scores><citationCount>0</citationCount><reanalysisCount>0</reanalysisCount><viewCount>0</viewCount><searchCount>0</searchCount></scores><additional><omics_type>Proteomics</omics_type><submitter>Sanjeeva Srivastava</submitter><technology_type>SRM/MRM</technology_type><species>Homo Sapiens</species><full_dataset_link>https://panoramaweb.org/covid19semen.url</full_dataset_link><submitter_email>sanjeeva@iitb.ac.in</submitter_email><submitter_affiliation>Biosciences and Bioengineering Department, IIT Bombay</submitter_affiliation><sample_protocol></sample_protocol><repository>PanoramaPublic</repository><data_protocol></data_protocol><pubmed_abstract>A considerable section of males suffered from COVID-19, with many experiencing long-term repercussions. Recovered males have been documented to have compromised fertility, albeit the mechanisms remain unclear. We investigated the impact of COVID-19 on semen proteome following complete clinical recovery using mass spectrometry. A label-free quantitative proteomics study involved 10 healthy fertile subjects and 17 COVID-19-recovered men. With 1% false discovery rate and >1 unique peptide stringency, MaxQuant analysis found 1099 proteins and 8503 peptides. Of the 48 differentially expressed proteins between the healthy and COVID-19-recovered groups, 21 proteins were downregulated and 27 were upregulated in COVID-19-recovered males. The major pathways involved in reproductive functions, such as sperm-oocyte recognition, testosterone response, cell motility regulation, adhesion regulation, extracellular matrix adhesion, and endopeptidase activity, were downregulated in COVID-19-recovered patients according to bioinformatics analysis. Furthermore, the targeted approach revealed significant downregulation of semenogelin 1 and prosaposin, two proteins related to male fertility. Therefore, we demonstrate the alteration of semen proteome in response to COVID-19, thus disrupting the male reproductive function despite the patient's clinical remission. Hence, to understand fertility-related biological processes triggered by this infection, a protracted evaluation of the consequences of COVID-19 in recovered men is warranted.</pubmed_abstract><pubmed_title>Semen Proteomics of COVID-19 Convalescent Men Reveals Disruption of Key Biological Pathways Relevant to Male Reproductive Function.</pubmed_title><pubmed_authors>Ghosh Susmita S, Parikh Swapneil S, Nissa Mehar Un MU, Acharjee Arup A, Singh Avinash A, Patwa Dhruv D, Makwana Prashant P, Athalye Arundhati A, Barpanda Abhilash A, Laloraya Malini M, Srivastava Sanjeeva S, Parikh Firuza F</pubmed_authors><description_synonyms>COVID19, other disease, testicle, Effects, COVID-19, number, Virus Infection, COVID-19 Virus Diseases, 2019 novel coronavirus, Spectrum Analyses, Ximpact, Virus Disease, presence, 2019 nCoV Disease, Long Term, element, protrusion, gonad of male reproductive system, diseases, 2019-nCoV Disease, SARS CoV 2 Infection, gonad of male genitalia, Mass, Severe Acute Respiratory Syndrome Coronavirus 2 Infection, disease or disorder, diseases and disorders, β-coronavirus, testiculus, Analysis, (2Z)-but-2-enedioate, Effect, 2019-nCoV, COVID 19 Pandemic, Mass Spectroscopy, male, organ, Mass Spectrum Analysis, imprinted and ancient gene protein, study, human disease, β-CoVs, Analyses, Longterm, Testicle, COVID-19 Virus Infection, Coronavirus Disease 2019, severe acute respiratory syndrome coronavirus 2, Coronavirus Disease-19, Long-Term, SARS-CoV-2 Infection, beta-CoVs, 2010305L05Rik, ACEH, non-neoplastic, COVID-19 Virus, sperm, anatomical unit, orchis, Clients, body organ, UNQ868/PRO1885, disorder, Homo sapiens disease, Long-Term Effect, testes, COVID 19 Virus Disease, SARS Coronavirus 2 Infection, Long-Term Effects, 2019-nCoV Infections, ejaculate, Disease, Coronavirus Disease 19, β-CoV, anatomical protrusion, beta-CoV, Males, disorders, SARS-CoV-2, Longterm Effect, medical condition, 2019 Novel Coronavirus Disease, SARS-CoV-2 Infections, 2019 nCoV Infection, COVID 19 Virus Infection, Client, Spectrum Analysis, impact-a, COVID-19 Virus Disease, Spectroscopy, 2019-nCoV Infection, count in organism, Seminal Plasma, MS, Long Term Effects, Diseases, Infection, IMPACT, imprinted and ancient gene protein homolog, condition, Coronavirus, COVID-19 Virus Infections, Mass Spectrum Analyses, Reproductive., Plasma, Mass Spectrum, betacoronavirus, Disease 2019, Pandemic, maleate, Spectrometry, male gonad, COVID-19 Pandemics, COVID-19 Pandemic, SARS-coronavirus 2, Longterm Effects, male human body, seminal fluid, disease, Health, Patient, spine, Testicles, 2019 Novel Coronavirus Infection, 2019-nCoV Diseases, E430016J11Rik, Seminal, COVID 19, Testes, RWDD5</description_synonyms><pubmed_title_synonyms>COVID19, Product, Biologic Pharmaceuticals, Peptidomics, multiple endocrine neoplasia syndrome, COVID-19, men syndromes, Virus Infection, COVID-19 Virus Diseases, 2019 novel coronavirus, Multiple endocrine neoplasia, Virus Disease, dIKK-gamma, 2019 nCoV Disease, Biological, 2019-nCoV Disease, DmIKK-gamma, SARS CoV 2 Infection, Severe Acute Respiratory Syndrome Coronavirus 2 Infection, β-coronavirus, dmIKKgamma, Biological Product, IKK[[gamma]], (2Z)-but-2-enedioate, 2019-nCoV, COVID 19 Pandemic, IKKg, KEY, Key, Biologicals, Drugs, β-CoVs, Biologic Drugs, Natural, COVID-19 Virus Infection, Coronavirus Disease 2019, Natural Product, multiple endocrine neoplasia, severe acute respiratory syndrome coronavirus 2, Coronavirus Disease-19, Boys, Biological Drugs, SARS-CoV-2 Infection, beta-CoVs, COVID-19 Virus, men syndrome, Biological Medicine, IKK, sperm, ELL1, Ell1, Medicine, Medicines, Biologic Drug, COVID 19 Virus Disease, SARS Coronavirus 2 Infection, Biologic, ejaculate, 2019-nCoV Infections, Pharmaceuticals, Products, Disease, Coronavirus Disease 19, β-CoV, Multiple endocrine neoplasms, beta-CoV, DmelCG10120, Biologic Products, Biologic Medicines, Males, Multiple Endocrine Neoplasia, MDH, SARS-CoV-2, 2019 Novel Coronavirus Disease, SARS-CoV-2 Infections, ME, 2019 nCoV Infection, COVID 19 Virus Infection, familial endocrine, COVID-19 Virus Disease, 2019-nCoV Infection, IKKgamma, DmIKKgamma, Seminal Plasma, dIKK, Biopharmaceuticals, Familial endocrine adenomatosis, Kenny, Biopharmaceutical, Infection, Biologic Product, Coronavirus, COVID-19 Virus Infections, Men, MEN, multiple endocrine adenomatosis, Me, Plasma, betacoronavirus, Disease 2019, Pandemic, maleate, Dmikkgamma, Biological Medicines, Biological Drug, IKK-gamma, Adenomatosis, mem, Biologics, men, COVID-19 Pandemics, COVID-19 Pandemic, CG16910, SARS-coronavirus 2, Drug, male human body, seminal fluid, Endocrine neoplasia, PPP1R68, DmelCG16910, multiple, C19orf17, male., anon-WO0118547.278, Natural Products, 2019 Novel Coronavirus Infection, Multiple endocrine adenomatosis, 2019-nCoV Diseases, multiple endocrine neoplasia syndrome(s), Seminal, Mdh-NADP, COVID 19, CG10120</pubmed_title_synonyms><name_synonyms>COVID19, Disease, Coronavirus Disease 19, β-CoV, beta-CoV, Proteins, COVID-19, SARS-CoV-2, Virus Infection, COVID-19 Virus Diseases, 2019 novel coronavirus, Semen Proteins, 2019 Novel Coronavirus Disease, SARS-CoV-2 Infections, 2019 nCoV Infection, COVID 19 Virus Infection, Virus Disease, 2019 nCoV Disease, COVID-19 Virus Disease, 2019-nCoV Infection, Client., 2019-nCoV Disease, SARS CoV 2 Infection, Infection, Severe Acute Respiratory Syndrome Coronavirus 2 Infection, Coronavirus, COVID-19 Virus Infections, β-coronavirus, 2019-nCoV, COVID 19 Pandemic, β-CoVs, betacoronavirus, Disease 2019, Pandemic, COVID-19 Virus Infection, Coronavirus Disease 2019, severe acute respiratory syndrome coronavirus 2, Coronavirus Disease-19, COVID-19 Pandemics, SARS-CoV-2 Infection, COVID-19 Pandemic, beta-CoVs, SARS-coronavirus 2, COVID-19 Virus, Semen, Patient, Clients, 2019 Novel Coronavirus Infection, 2019-nCoV Diseases, Seminal, COVID 19 Virus Disease, SARS Coronavirus 2 Infection, COVID 19, 2019-nCoV Infections</name_synonyms><pubmed_abstract_synonyms>Testosteron, determination, multiple endocrine neoplasia syndrome, Testoderm, Infestations and Infections, Virus Infection, 2019 novel coronavirus, Ovocytes, Virus Disease, Ovocyte, Downregulation, 2019 nCoV Disease, Social Controls, Molecular Biologies, ter, World Fertility Survey, peptide, Fertility Preferences, Polypeptides, Biological Processes, Biological Phenomenon, 8-Isotestosterone, peptido, Bio Informatics, Below Replacement, Biological, 2019-nCoV Disease, 17-beta-Hydroxy-8 alpha-4-Androsten-3-one, cell movement, Analysis, Cell Motility, Extracellular Matrices, (2Z)-but-2-enedioate, Phenomenon, COVID 19 Pandemic, Formal Social Controls, Fertility Surveys, male, imprinted and ancient gene protein, Mass Spectrum Analysis, X-Chromosome-Bearing Sperm, sperm cell, AndroGel, Fertility Incentives, X-Bearing, peptides, Analyses, Testim, Biology, Natural, Coronavirus Disease 2019, Cell Locomotion, Androderm, proteasome endopeptidase activity, Coronavirus Disease-19, Boys, beta-CoVs, Bio-Informatic, Computational, Social, 17beta-hydroxyandrost-4-en-3-one, Y Chromosome Bearing Sperm, testosterone, Movements, 4-androsten-17beta-ol-3-one, testosterona, Y-Bearing Sperm, Bsg75C, X Chromosome Bearing Sperm, Bio-Informatics, ELL1, Ell1, Y-Chromosome-Bearing Sperms, Fertility Determinant, Fertility Preference, Testosterone, Locomotion, Infections and Infestations, Testopel, COVID 19 Virus Disease, Differential Fertility, 17 beta Hydroxy 4 Androsten 3 one, Computational Molecular Biologies, Oocyte, 2019-nCoV Infections, ejaculate, Y-Chromosome-Bearing, Motility, TESTOSTERONE, elastase activity, β-CoV, Multiple endocrine neoplasms, DmelCG10120, Process, World Fertility Surveys, Cell Migration, Biologies, SARS-CoV-2, Androst-4-en-17beta-ol-3-one, 2019 Novel Coronavirus Disease, Androtop, 2019 nCoV Infection, COVID 19 Virus Infection, Spectrum Analysis, familial endocrine, Computational Molecular, Spectroscopy, Seminal Plasma, Receptor Down-Regulation, Term, Computational Molecular Biology, 17 beta Hydroxy 8 alpha 4 Androsten 3 one, Coronavirus, COVID-19 Virus Infections, Biological Process, multiple endocrine adenomatosis, Biologic Phenomena, X-Chromosome-Bearing, Bioinformatic, Pandemic, maleate, testosteronum, Spectrometry, oogonium, Control, Adenomatosis, Infection and Infestation, Controls, spermatozoid, Preferences, X Bearing Sperm, Fertility Determinants, Andropatch, seminal fluid, Endocrine neoplasia, multiple, Patient, label, C19orf17, Sperms, Surveys, anon-WO0118547.278, 2019 Novel Coronavirus Infection, 2019-nCoV Diseases, Polypeptide, multiple endocrine neoplasia syndrome(s), Testolin, Fecundability, E430016J11Rik, Regulation, Proteomes, Mdh-NADP, Marital Fertility, Regulations, COVID19, Subfecundity, Sperm, Migration, Peptidomics, Processes, COVID-19, men syndromes, Matrix, Gene, COVID-19 Virus Diseases, Fertility, Multiple endocrine neoplasia, Spectrum Analyses, Y-Chromosome-Bearing Sperm, Matrices, Ximpact, Determinant, Histerone, SARS CoV 2 Infection, cell locomotion, Mass, Gene Products, Spermatozoon, Severe Acute Respiratory Syndrome Coronavirus 2 Infection, Survey, Preference, β-coronavirus, World Fertility, Y Bearing Sperm, 2019-nCoV, Fecundity, Mass Spectroscopy, study, matrisome, β-CoVs, 17beta-Hydroxy-4-androsten-3-one, COVID-19 Virus Infection, 17beta-hydroxy-4-androsten-3-one, multiple endocrine neoplasia, severe acute respiratory syndrome coronavirus 2, X-Bearing Sperms, SARS-CoV-2 Infection, clinical infection, Cell Movements, X-Chromosome-Bearing Sperms, COVID-19 Virus, Movement, Infestation and Infection, men syndrome, DmelCG4216, sperm, Clients, Below Replacement Fertility, Extracellular, peptidos, SPERM, Fertility Incentive, SARS Coronavirus 2 Infection, Biologic, disease remission, movement of a cell, Disease, X-Bearing Sperm, Molecular Biology, Coronavirus Disease 19, beta-CoV, Formal Social Control, Males, World, Testosterone Sulfate, Multiple Endocrine Neoplasia, MDH, Proteins, total expressed protein, SARS-CoV-2 Infections, ME, Client, impact-a, Peptide, Cell, Bioinformatics, Down Regulation, spermatozoon, COVID-19 Virus Disease, 2019-nCoV Infection, polypeptide, MS, Down-Regulation, Sustanon, Social Control, Down-Regulation (Physiology), endoprotease activity, chemical analysis, Protein, Familial endocrine adenomatosis, Phenomena, Infection, Natural Fertility, IMPACT, imprinted and ancient gene protein homolog, Men, MEN, Sterotate, Me, Determinants, Y-Bearing, Mass Spectrum Analyses, CG10120., Plasma, Mass Spectrum, betacoronavirus, Disease 2019, CG4216, mem, patient, men, COVID-19 Pandemics, COVID-19 Pandemic, SARS-coronavirus 2, Protein Gene Products, male human body, Gene Proteins, Differential, Y-Bearing Sperms, PPP1R68, Marital, 17-beta-Hydroxy-4-Androsten-3-one, Multiple endocrine adenomatosis, Peptid, regulation, proteinase, assay, Receptor, Seminal, COVID 19, RWDD5, Fertility Survey, CG10120, 8 Isotestosterone</pubmed_abstract_synonyms><citation_count>0</citation_count></additional><is_claimable>false</is_claimable><name>Targeted validation of significantly altered semen proteins in COVID-19 patients</name><description>The current global outbreak of COVID-19 has significantly impacted several organ systems.  Male reproductive organs are among the potential targets of SARS-CoV-2 infection owing to the presence of abundant viral receptors; ACE2 and TMPRSS2 in the testis. However, the questions pertaining to the long term effects of SARS-CoV-2 infection on male fertility are still unanswered. 
For this study, we procured the semen samples from COVID-19 recovered patients and performed mass spectrometry based proteomic studies to understand the impact of the disease on the biological processes involved in reproductive health.</description><dates><publication>Sun Jun 26 00:00:00 GMT+01:00 2022</publication></dates><accession>PXD026849</accession><cross_references><TAXONOMY>9606</TAXONOMY><pubmed>35309488</pubmed></cross_references></HashMap>