{"database":"panorama","file_versions":[],"scores":null,"additional":{"omics_type":["Proteomics"],"submitter":["Denina Simmons"],"species":["Oncorhynchus Mykiss"],"full_dataset_link":["https://panoramaweb.org/AOLabTannouriRT2022.url"],"submitter_email":["denina.simmons@ontariotechu.ca"],"submitter_affiliation":["Ontario Tech University, Oshawa ON, Canada"],"sample_protocol":[""],"repository":["PanoramaPublic"],"data_protocol":[""],"pubmed_abstract":["Protein expression patterns adapt to various cues to meet the needs of an organism. The dynamicity of an organism's proteome can therefore reveal information about an organism's health. Proteome databases contain limited information regarding organisms outside of medicinal biology. The UniProt human and mouse proteomes are extensively reviewed and ∼50 % of both proteomes include tissue specificity, while >99 % of the rainbow trout proteome lacks tissue specificity. This study aimed to expand knowledge on the rainbow trout proteome with a focus on understanding the origin of blood plasma proteins. Blood, brain, heart, liver, kidney, and gills were collected from adult rainbow trout, plasma and tissue proteins were analyzed using liquid chromatography tandem mass spectrometry. Over 10,000 proteins were identified across all groups. Our data indicated that the majority of the plasma proteome is shared amongst multiple tissue types, though 4-7 % of the plasma proteome is uniquely originated from each tissue (gill > heart > liver > kidney > brain)."],"pubmed_title":["Characterizing the origin of blood plasma proteins from organ tissues in rainbow trout (Oncorhynchus mykiss) using a comparative non-targeted proteomics approach."],"pubmed_authors":["Tannouri Nancy N, Simmons Denina Bobbie Dawn DBD"],"description_synonyms":["the brain, liquid chromatography tandem mass spectroscopy, Fresh, multi-cellular organism, human being, Herz, Rainbow Trout, Fresh Frozen Plasma, Laboratory, gills, Blood, adult stage, Mus domesticus, Cue, branchial tissue, Gene, adult heart, branchial heart, mEET, protein, protein-containing complex, Normalcies, House Mouse, LC-MS-MS, Human, jecur, Gill, Readability, Trout, Homo sapiens, House, NEDD4 WW domain-binding protein 3, LC-MSMS, Gene Products, Mus musculus domesticus, rainbow trout, synganglion, protein aggregate, animal, Mice, Man, adult, Normalities, average, study, Fresh Frozen Plasmas, Fresh Frozen, Blood Plasma, branchia, FOCUS, LCMSMS, Man (Taxonomy), Swiss, external gill, Tissue, iecur, Swiss Mice, suprasegmental levels of nervous system, cardiac structure, Salmo gairdneri, LPS-induced TNF-alpha factor homolog, LITAF-like protein, Blood Plasmas, species, house mouse, Steelheads, plasma, reniculate kidney, LC-MS2, Individual Health, Steelhead, Frozen Plasma, suprasegmental structures, whole blood, protein complex, body, Salmo mykiss, Modern, Proteins, mouse, LC-MS/MS, total expressed protein, whole body, Hearts, Normalcy, Plasmas, encephalon, Frozen Plasmas, organism, LC/MS/MS, native protein, Mus, Onchorhynchus mykiss, Protein, simple tissue, cardium, Individual, Adults, Plasma, Mus musculus, Epistemology, portion of blood plasma, whole organism, Normality, mice, Encephalon, Swiss Mouse, portion of plasma, House Mice, Rainbow, Understanding, human, Encephalon., domesticus, Laboratory Mice, Protein Gene Products, Redband, Gene Proteins, Livers, Kidneys, blood plasm, Health, Redband Trout, liquid chromatography-tandem mass spectroscopy, Modern Man, Koerper, Parasalmo mykiss, liquid chromatography tandem mass spectrometry, Mouse, Proteomes, Laboratory Mouse, Estrogen-enhanced transcript protein"],"pubmed_title_synonyms":["organ, Peptidomics., Plasma, Fresh, Steelhead, Fresh Frozen Plasmas, Fresh Frozen, Blood Plasma, portion of blood plasma, Frozen Plasma, Rainbow Trout, Fresh Frozen Plasma, Blood, Salmo mykiss, Proteins, Tissue, portion of plasma, Gene, Rainbow, Plasmas, Salmo gairdneri, element, Protein Gene Products, Redband, Oncorhynchus nerka mykiss, Frozen Plasmas, Gene Proteins, blood plasm, Trout, Redband Trout, anatomical unit, Onchorhynchus mykiss, Blood Plasmas, Protein, body organ, Gene Products, Parasalmo mykiss, rainbow trout, Steelheads, plasma"],"pubmed_abstract_synonyms":["the brain, liquid chromatography tandem mass spectroscopy, Fresh, multi-cellular organism, human being, Herz, Rainbow Trout, Fresh Frozen Plasma, Laboratory, gills, Blood, adult stage, Mus domesticus, Cue, branchial tissue, Gene, adult heart, branchial heart, mEET, protein, protein-containing complex, Normalcies, House Mouse, LC-MS-MS, Human, jecur, Gill, Readability, Trout, Homo sapiens, House, NEDD4 WW domain-binding protein 3, LC-MSMS, Gene Products, Mus musculus domesticus, rainbow trout, synganglion, protein aggregate, animal, Mice, Man, adult, Normalities, average, study, Fresh Frozen Plasmas, Fresh Frozen, Blood Plasma, branchia, FOCUS, LCMSMS, Man (Taxonomy), Swiss, external gill, Tissue, iecur, Swiss Mice, suprasegmental levels of nervous system, cardiac structure, Salmo gairdneri, LPS-induced TNF-alpha factor homolog, LITAF-like protein, Blood Plasmas, species, house mouse, Steelheads, plasma, reniculate kidney, LC-MS2, Individual Health, Steelhead, Frozen Plasma, suprasegmental structures, whole blood, protein complex, body, Salmo mykiss, Modern, Proteins, mouse, LC-MS/MS, total expressed protein, whole body, Hearts, Normalcy, Plasmas, encephalon, Frozen Plasmas, organism, LC/MS/MS, native protein, Mus, Onchorhynchus mykiss, Protein, simple tissue, cardium, Individual, Adults, Plasma, Mus musculus, Epistemology, portion of blood plasma, whole organism, Normality, mice, Encephalon, Swiss Mouse, portion of plasma, House Mice, Rainbow, Understanding, human, Encephalon., domesticus, Laboratory Mice, Protein Gene Products, Redband, Gene Proteins, Livers, Kidneys, blood plasm, Health, Redband Trout, liquid chromatography-tandem mass spectroscopy, Modern Man, Koerper, Parasalmo mykiss, liquid chromatography tandem mass spectrometry, Mouse, Proteomes, Laboratory Mouse, Estrogen-enhanced transcript protein"],"name_synonyms":["organ, Peptidomics., Plasma, Fresh, Steelhead, Fresh Frozen Plasmas, Fresh Frozen, Blood Plasma, portion of blood plasma, Frozen Plasma, Rainbow Trout, Fresh Frozen Plasma, Blood, Salmo mykiss, Proteins, Tissue, portion of plasma, Gene, Rainbow, Plasmas, Salmo gairdneri, element, Protein Gene Products, Redband, Oncorhynchus nerka mykiss, Frozen Plasmas, Gene Proteins, blood plasm, Trout, Redband Trout, anatomical unit, Onchorhynchus mykiss, Blood Plasmas, Protein, body organ, Gene Products, Parasalmo mykiss, rainbow trout, Steelheads, plasma"],"additional_accession":[]},"is_claimable":false,"name":"Characterizing the origin of blood plasma proteins from organ tissues in rainbow trout (Oncorhynchus mykiss) using a comparative non-targeted proteomics approach","description":"Protein expression patterns adapt to various cues to meet the needs of an organism. The dynamicity of an organism’s proteome can therefore reveal information about an organism’s health. Proteome databases contain limited information regarding organisms outside of medicinal biology. The Uniprot human and mouse proteomes are extensively reviewed and ~50% of both proteomes include tissue specificity, while >99% of the rainbow trout proteome lacks tissue specificity. This study aimed to expand knowledge on the rainbow trout proteome with a focus on understanding the origin of blood plasma proteins. Blood, brain, heart, liver, kidney, and gills were collected from adult rainbow trout, plasma and tissue proteins were analyzed using liquid chromatography tandem mass spectrometry. Over 10,000 proteins were identified across all groups. Our data indicated that the majority of the plasma proteome is shared among multiple tissue types, though 4-7% of the plasma proteome is uniquely originated from each tissue (gill > heart > liver > kidney > brain).","dates":{"publication":"Fri Mar 31 00:00:00 BST 2023"},"accession":"PXD037782","cross_references":{"TAXONOMY":["8022"],"pubmed":["36871493"]}}