{"database":"PeptideAtlas","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fasta":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_428_searchdatabase_tandem.fasta"],"Other":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_mzXML_201104201631.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_428_searchdatabase_spectrast.splib","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_prot_428_201104201641.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_428_tandem.params","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_README","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_428_search.params.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_prot_428_201104201641.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_Search_Results_428_201104201639.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_428_spectrast.params","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_mzXML_201104201631.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000093/PAe000093_Search_Results_428_201104201639.tar.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"submitter":["Mark Flory"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=100'"],"synonyms":[""],"submitter_email":["","mflory@wesleyan.edu"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ"],"project_tag":[""],"species":["Saccharomyces Cerevisiae (yeast)"],"publication":[""],"pubmed_abstract":["Understanding how proteins and their complex interaction networks convert the genomic information into a dynamic living organism is a fundamental challenge in biological sciences. As an important step towards understanding the systems biology of a complex eukaryote, we cataloged 63% of the predicted Drosophila melanogaster proteome by detecting 9,124 proteins from 498,000 redundant and 72,281 distinct peptide identifications. This unprecedented high proteome coverage for a complex eukaryote was achieved by combining sample diversity, multidimensional biochemical fractionation and analysis-driven experimentation feedback loops, whereby data collection is guided by statistical analysis of prior data. We show that high-quality proteomics data provide crucial information to amend genome annotation and to confirm many predicted gene models. We also present experimentally identified proteotypic peptides matching approximately 50% of D. melanogaster gene models. This library of proteotypic peptides should enable fast, targeted and quantitative proteomic studies to elucidate the systems biology of this model organism."],"pubmed_title":["A high-quality catalog of the Drosophila melanogaster proteome."],"pubmed_authors":["Brunner Erich E, Ahrens Christian H CH, Mohanty Sonali S, Baetschmann Hansruedi H, Loevenich Sandra S, Potthast Frank F, Deutsch Eric W EW, Panse Christian C, de Lichtenberg Ulrik U, Rinner Oliver O, Lee Hookeun H, Pedrioli Patrick G A PG, Malmstrom Johan J, Koehler Katja K, Schrimpf Sabine S, Krijgsveld Jeroen J, Kregenow Floyd F, Heck Albert J R AJ, Hafen Ernst E, Schlapbach Ralph R, Aebersold Ruedi R"],"additional_accession":[]},"is_claimable":false,"name":"T00","description":"yeast cell-cycle 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