{"database":"PeptideAtlas","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fasta":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_406_searchdatabase_tandem.fasta"],"Other":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_prot_406_201104201721.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_406_searchdatabase_spectrast.splib","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_406_search.params.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_Search_Results_406_201104201717.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_prot_406_201104201721.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_README","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_mzXML_201104201705.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_mzXML_201104201705.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_406_spectrast.params","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_Search_Results_406_201104201717.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Yeast/PAe000148/PAe000148_406_tandem.params"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"submitter":["Ying W, Jiang Y, Guo L, Hao Y, Zhang Y, Wu S, Zhong F, Wang J, Shi R, Li D, Wan P, Li X, Wei H, Li J, Wang Z, Xue X, Cai Y, Zhu Y, Qian X, He F"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=159'"],"synonyms":[""],"submitter_email":["","mflory@systemsbiology.org"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ"],"project_tag":[""],"species":["Saccharomyces Cerevisiae (yeast)"],"publication":[""],"pubmed_abstract":["Quantitative profiling of proteins, the direct effectors of nearly all biological functions, will undoubtedly complement technologies for the measurement of mRNA. Systematic proteomic measurement of the cell cycle is now possible by using stable isotopic labeling with isotope-coded affinity tag reagents and software tools for high-throughput analysis of LC-MS/MS data. We provide here the first such study achieving quantitative, global proteomic measurement of a time-course gene expression experiment in a model eukaryote, the budding yeast Saccharomyces cerevisiae, during the cell cycle. We sampled 48% of all predicted ORFs, and provide the data, including identifications, quantitations, and statistical measures of certainty, to the community in a sortable matrix. We do not detect significant concordance in the dynamics of the system over the time-course tested between our proteomic measurements and microarray measures collected from similarly treated yeast cultures. Our proteomic dataset therefore provides a necessary and complementary measure of eukaryotic gene expression, establishes a rich database for the functional analysis of S. cerevisiae proteins, and will enable further development of technologies for global proteomic analysis of higher eukaryotes."],"pubmed_title":["Quantitative proteomic analysis of the budding yeast cell cycle using acid-cleavable isotope-coded affinity tag reagents."],"pubmed_authors":["Flory Mark R MR, Lee Hookeun H, Bonneau Richard R, Mallick Parag P, Serikawa Kyle K, Morris David R DR, Aebersold Ruedi R"],"additional_accession":[]},"is_claimable":false,"name":"TSAAT000c","description":"TSAA time 0 experiment cleavable ICAT","dates":{"publication":"2006-12-31","export":"2016-03-29"},"accession":"PAe000148","cross_references":{"SGD":["YAL003W","YAL005C","YAL007C","YAL012W","YAL016W","YAL021C","YAL023C","YAL029C","YAL033W","YAL035W","YAL036C","YAL038W","YAL042W","YAL043C","YAL049C","YAL051W","YAR002C-A","YAR007C","YAR018C","YBL003C","YBL004W","YBL005W-B","YBL007C","YBL015W","YBL016W","YBL017C","YBL022C","YBL024W","YBL027W","YBL029C-A","YBL030C","YBL036C","YBL037W","YBL039C","YBL041W","YBL045C","YBL050W","YBL054W","YBL056W","YBL058W","YBL059C-A","YBL068W","YBL072C","YBL076C","YBL079W","YBL082C","YBL087C","YBL091C","YBL098W","YBL099W","YBR011C","YBR015C","YBR017C","YBR023C","YBR025C","YBR026C","YBR031W","YBR034C","YBR035C","YBR039W","YBR040W","YBR046C","YBR048W","YBR052C","YBR058C","YBR061C","YBR068C","YBR073W","YBR078W","YBR082C","YBR084W","YBR087W","YBR088C","YBR091C","YBR092C","YBR093C","YBR094W","YBR096W","YBR101C","YBR103W","YBR110W","YBR111C","YBR112C","YBR115C","YBR118W","YBR121C","YBR125C","YBR126C","YBR127C","YBR135W","YBR137W","YBR143C","YBR151W","YBR153W","YBR159W","YBR162C","YBR169C","YBR170C","YBR177C","YBR189W","YBR191W","YBR195C","YBR196C","YBR198C","YBR199W","YBR205W","YBR208C","YBR218C","YBR221C","YBR229C","YBR234C","YBR236C","YBR244W","YBR245C","YBR247C","YBR248C","YBR249C","YBR261C","YBR263W","YBR264C","YBR265W","YBR281C","YBR286W","YBR288C","YCL009C","YCL011C","YCL014W","YCL017C","YCL027W","YCL030C","YCL031C","YCL035C","YCL037C","YCL040W","YCL043C","YCL049C","YCL050C","YCL054W","YCL055W","YCL057W","YCL059C","YCL064C","YCR009C","YCR012W","YCR017C","YCR020W-B","YCR031C","YCR042C","YCR044C","YCR051W","YCR053W","YCR072C","YCR073W-A","YCR087C-A","YCR088W","YCR090C","YCR093W","YDL007W","YDL014W","YDL022W","YDL029W","YDL040C","YDL046W","YDL047W","YDL055C","YDL060W","YDL061C","YDL063C","YDL073W","YDL078C","YDL084W","YDL086W","YDL095W","YDL097C","YDL100C","YDL101C","YDL102W","YDL103C","YDL112W","YDL122W","YDL125C","YDL126C","YDL130W","YDL131W","YDL132W","YDL134C","YDL136W","YDL140C","YDL141W","YDL143W","YDL144C","YDL145C","YDL147W","YDL160C","YDL164C","YDL165W","YDL166C","YDL167C","YDL168W","YDL171C","YDL174C","YDL175C","YDL178W","YDL182W","YDL185W","YDL188C","YDL190C","YDL195W","YDL198C","YDL201W","YDL205C","YDL208W","YDL209C","YDL215C","YDL229W","YDL236W","YDL237W","YDR001C","YDR002W","YDR011W","YDR017C","YDR023W","YDR032C","YDR035W","YDR037W","YDR038C","YDR044W","YDR045C","YDR050C","YDR051C","YDR060W","YDR062W","YDR064W","YDR071C","YDR074W","YDR083W","YDR089W","YDR091C","YDR098C","YDR101C","YDR117C","YDR119W","YDR120C","YDR121W","YDR122W","YDR127W","YDR129C","YDR135C","YDR140W","YDR141C","YDR150W","YDR152W","YDR155C","YDR158W","YDR170C","YDR172W","YDR177W","YDR182W","YDR188W","YDR190C","YDR194C","YDR210C-D","YDR211W","YDR212W","YDR214W","YDR226W","YDR232W","YDR233C","YDR234W","YDR237W","YDR238C","YDR245W","YDR251W","YDR257C","YDR266C","YDR272W","YDR284C","YDR292C","YDR293C","YDR294C","YDR296W","YDR300C","YDR304C","YDR321W","YDR324C","YDR326C","YDR333C","YDR341C","YDR342C","YDR346C","YDR347W","YDR353W","YDR361C","YDR365C","YDR368W","YDR372C","YDR380W","YDR382W","YDR384C","YDR385W","YDR390C","YDR391C","YDR395W","YDR399W","YDR404C","YDR405W","YDR406W","YDR418W","YDR429C","YDR432W","YDR436W","YDR447C","YDR449C","YDR450W","YDR452W","YDR454C","YDR457W","YDR458C","YDR465C","YDR481C","YDR483W","YDR487C","YDR496C","YDR502C","YDR517W","YDR527W","YDR529C","YDR539W","YEL002C","YEL013W","YEL015W","YEL019C","YEL020W-A","YEL022W","YEL026W","YEL027W","YEL031W","YEL032W","YEL034W","YEL040W","YEL042W","YEL046C","YEL047C","YEL050C","YEL055C","YEL058W","YEL060C","YEL071W","YER001W","YER003C","YER004W","YER006W","YER007C-A","YER009W","YER010C","YER012W","YER014W","YER017C","YER023W","YER025W","YER031C","YER036C","YER042W","YER043C","YER049W","YER052C","YER055C","YER056C-A","YER057C","YER062C","YER069W","YER070W","YER073W","YER074W","YER080W","YER082C","YER086W","YER089C","YER091C","YER094C","YER103W","YER105C","YER107C","YER110C","YER123W","YER126C","YER133W","YER136W","YER145C","YER148W","YER151C","YER155C","YER156C","YER165W","YER166W","YER169W","YER176W","YER177W","YER178W","YFL007W","YFL016C","YFL017C","YFL018C","YFL022C","YFL028C","YFL036W","YFL037W","YFL039C","YFL041W","YFL045C","YFR004W","YFR006W","YFR009W","YFR010W","YFR016C","YFR028C","YFR031C-A","YFR033C","YFR037C","YFR044C","YFR049W","YFR050C","YFR052W","YGL001C","YGL008C","YGL009C","YGL011C","YGL012W","YGL014W","YGL016W","YGL017W","YGL019W","YGL026C","YGL027C","YGL030W","YGL031C","YGL040C","YGL043W","YGL048C","YGL049C","YGL055W","YGL056C","YGL062W","YGL065C","YGL067W","YGL070C","YGL076C","YGL078C","YGL084C","YGL087C","YGL094C","YGL097W","YGL099W","YGL100W","YGL101W","YGL103W","YGL105W","YGL107C","YGL111W","YGL112C","YGL115W","YGL120C","YGL122C","YGL123W","YGL128C","YGL129C","YGL135W","YGL137W","YGL147C","YGL148W","YGL151W","YGL155W","YGL157W","YGL167C","YGL169W","YGL171W","YGL173C","YGL187C","YGL189C","YGL195W","YGL200C","YGL202W","YGL206C","YGL207W","YGL211W","YGL220W","YGL221C","YGL228W","YGL232W","YGL234W","YGL236C","YGL241W","YGL244W","YGL245W","YGL252C","YGL253W","YGR001C","YGR007W","YGR012W","YGR017W","YGR024C","YGR027C","YGR027W-A","YGR031W","YGR032W","YGR040W","YGR054W","YGR060W","YGR061C","YGR063C","YGR068C","YGR072W","YGR078C","YGR085C","YGR086C","YGR090W","YGR094W","YGR103W","YGR106C","YGR109W-A","YGR116W","YGR118W","YGR120C","YGR123C","YGR124W","YGR128C","YGR135W","YGR145W","YGR148C","YGR155W","YGR158C","YGR159C","YGR162W","YGR173W","YGR175C","YGR177C","YGR180C","YGR184C","YGR185C","YGR187C","YGR192C","YGR200C","YGR204W","YGR205W","YGR208W","YGR211W","YGR214W","YGR218W","YGR229C","YGR232W","YGR233C","YGR234W","YGR240C","YGR245C","YGR246C","YGR253C","YGR254W","YGR256W","YGR260W","YGR264C","YGR266W","YGR267C","YGR279C","YGR280C","YGR282C","YGR283C","YGR285C","YHL021C","YHL030W","YHL034C","YHL038C","YHL039W","YHR001W","YHR003C","YHR005C","YHR005C-A","YHR007C","YHR008C","YHR009C","YHR010W","YHR012W","YHR013C","YHR017W","YHR018C","YHR019C","YHR020W","YHR025W","YHR027C","YHR029C","YHR030C","YHR034C","YHR037W","YHR039C","YHR039C-A","YHR042W","YHR047C","YHR049W","YHR051W","YHR052W","YHR056C","YHR064C","YHR065C","YHR068W","YHR072W","YHR074W","YHR084W","YHR086W","YHR089C","YHR092C","YHR097C","YHR098C","YHR099W","YHR103W","YHR104W","YHR106W","YHR107C","YHR108W","YHR111W","YHR112C","YHR113W","YHR122W","YHR128W","YHR132C","YHR135C","YHR137W","YHR146W","YHR149C","YHR150W","YHR158C","YHR163W","YHR169W","YHR170W","YHR174W","YHR179W","YHR183W","YHR188C","YHR190W","YHR196W","YHR197W","YHR199C","YHR201C","YHR203C","YHR205W","YHR208W","YHR215W","YHR216W","YIL005W","YIL009W","YIL020C","YIL021W","YIL043C","YIL051C","YIL053W","YIL063C","YIL066C","YIL067C","YIL075C","YIL076W","YIL078W","YIL090W","YIL091C","YIL094C","YIL105C","YIL108W","YIL109C","YIL110W","YIL115C","YIL116W","YIL125W","YIL126W","YIL128W","YIL130W","YIL137C","YIL142W","YIL143C","YIL145C","YIL155C","YIL161W","YIR006C","YIR008C","YIR012W","YIR026C","YIR034C","YJL001W","YJL002C","YJL008C","YJL010C","YJL014W","YJL026W","YJL034W","YJL039C","YJL042W","YJL050W","YJL052W","YJL054W","YJL055W","YJL069C","YJL080C","YJL084C","YJL087C","YJL088W","YJL098W","YJL101C","YJL109C","YJL111W","YJL117W","YJL121C","YJL123C","YJL128C","YJL130C","YJL136C","YJL138C","YJL140W","YJL141C","YJL145W","YJL157C","YJL166W","YJL167W","YJL171C","YJL172W","YJL176C","YJL178C","YJL186W","YJL189W","YJL190C","YJL197W","YJL200C","YJL207C","YJL217W","YJR002W","YJR003C","YJR005W","YJR007W","YJR009C","YJR016C","YJR024C","YJR025C","YJR031C","YJR032W","YJR041C","YJR042W","YJR045C","YJR046W","YJR063W","YJR064W","YJR065C","YJR066W","YJR069C","YJR070C","YJR074W","YJR075W","YJR076C","YJR077C","YJR084W","YJR085C","YJR091C","YJR094W-A","YJR096W","YJR103W","YJR104C","YJR105W","YJR109C","YJR121W","YJR123W","YJR133W","YJR135W-A","YJR139C","YJR143C","YJR144W","YJR148W","YKL004W","YKL006W","YKL007W","YKL009W","YKL010C","YKL013C","YKL018W","YKL021C","YKL027W","YKL029C","YKL033W-A","YKL035W","YKL054C","YKL056C","YKL057C","YKL060C","YKL069W","YKL074C","YKL079W","YKL080W","YKL081W","YKL100C","YKL104C","YKL105C","YKL106W","YKL113C","YKL114C","YKL126W","YKL127W","YKL128C","YKL129C","YKL130C","YKL135C","YKL139W","YKL145W","YKL146W","YKL148C","YKL150W","YKL152C","YKL157W","YKL166C","YKL173W","YKL175W","YKL180W","YKL181W","YKL182W","YKL186C","YKL194C","YKL195W","YKL205W","YKL207W","YKL210W","YKL211C","YKL213C","YKL214C","YKL215C","YKL216W","YKR003W","YKR014C","YKR018C","YKR038C","YKR048C","YKR055W","YKR056W","YKR060W","YKR070W","YKR071C","YKR080W","YKR081C","YKR082W","YKR084C","YLL008W","YLL011W","YLL013C","YLL018C","YLL024C","YLL026W","YLL029W","YLL034C","YLL036C","YLL045C","YLL050C","YLR001C","YLR017W","YLR022C","YLR024C","YLR027C","YLR028C","YLR029C","YLR032W","YLR038C","YLR043C","YLR044C","YLR050C","YLR055C","YLR058C","YLR059C","YLR060W","YLR061W","YLR069C","YLR074C","YLR075W","YLR089C","YLR090W","YLR096W","YLR106C","YLR108C","YLR109W","YLR113W","YLR114C","YLR126C","YLR129W","YLR134W","YLR144C","YLR150W","YLR153C","YLR167W","YLR172C","YLR175W","YLR179C","YLR180W","YLR186W","YLR188W","YLR192C","YLR195C","YLR196W","YLR197W","YLR199C","YLR203C","YLR208W","YLR214W","YLR216C","YLR225C","YLR244C","YLR248W","YLR249W","YLR257W","YLR259C","YLR262C","YLR268W","YLR270W","YLR274W","YLR276C","YLR291C","YLR293C","YLR300W","YLR301W","YLR303W","YLR304C","YLR305C","YLR312W-A","YLR314C","YLR321C","YLR330W","YLR336C","YLR340W","YLR342W","YLR347C","YLR351C","YLR355C","YLR359W","YLR370C","YLR375W","YLR380W","YLR384C","YLR388W","YLR389C","YLR390W-A","YLR397C","YLR398C","YLR399C","YLR401C","YLR409C","YLR410W","YLR414C","YLR420W","YLR430W","YLR432W","YLR433C","YLR438C-A","YLR441C","YLR447C","YLR448W","YLR450W","YML001W","YML004C","YML008C","YML010W","YML012W","YML014W","YML016C","YML028W","YML029W","YML034W","YML035C","YML052W","YML056C","YML057W","YML070W","YML072C","YML073C","YML075C","YML078W","YML080W","YML085C","YML086C","YML091C","YML096W","YML097C","YML103C","YML105C","YML106W","YML110C","YML115C","YML123C","YML124C","YML125C","YML126C","YML130C","YMR002W","YMR006C","YMR009W","YMR012W","YMR015C","YMR022W","YMR029C","YMR038C","YMR046C","YMR047C","YMR049C","YMR058W","YMR065W","YMR079W","YMR080C","YMR083W","YMR089C","YMR092C","YMR093W","YMR099C","YMR105C","YMR108W","YMR109W","YMR116C","YMR120C","YMR128W","YMR129W","YMR130W","YMR131C","YMR145C","YMR146C","YMR166C","YMR178W","YMR186W","YMR202W","YMR203W","YMR205C","YMR208W","YMR209C","YMR212C","YMR215W","YMR216C","YMR217W","YMR220W","YMR228W","YMR229C","YMR234W","YMR235C","YMR242C","YMR246W","YMR247C","YMR259C","YMR261C","YMR262W","YMR264W","YMR266W","YMR271C","YMR277W","YMR288W","YMR290C","YMR295C","YMR296C","YMR297W","YMR298W","YMR300C","YMR305C","YMR307W","YMR308C","YMR309C","YMR310C","YMR311C","YMR314W","YMR315W","YMR318C","YMR319C","YMR323W","YNL003C","YNL004W","YNL006W","YNL010W","YNL016W","YNL021W","YNL022C","YNL023C","YNL026W","YNL035C","YNL036W","YNL049C","YNL055C","YNL059C","YNL061W","YNL064C","YNL073W","YNL075W","YNL084C","YNL087W","YNL088W","YNL096C","YNL102W","YNL106C","YNL108C","YNL110C","YNL112W","YNL113W","YNL118C","YNL121C","YNL123W","YNL131W","YNL132W","YNL134C","YNL135C","YNL138W","YNL139C","YNL141W","YNL156C","YNL157W","YNL158W","YNL168C","YNL178W","YNL181W","YNL182C","YNL183C","YNL189W","YNL197C","YNL200C","YNL201C","YNL208W","YNL216W","YNL219C","YNL220W","YNL221C","YNL232W","YNL238W","YNL240C","YNL244C","YNL246W","YNL247W","YNL255C","YNL256W","YNL267W","YNL279W","YNL284C-A","YNL287W","YNL288W","YNL290W","YNL292W","YNL297C","YNL298W","YNL301C","YNL302C","YNL307C","YNL312W","YNL313C","YNL315C","YNL323W","YNL330C","YNR001C","YNR006W","YNR012W","YNR016C","YNR019W","YNR030W","YNR031C","YNR033W","YNR034W","YNR035C","YNR038W","YNR043W","YNR050C","YNR053C","YOL004W","YOL010W","YOL021C","YOL022C","YOL023W","YOL030W","YOL031C","YOL038W","YOL039W","YOL040C","YOL041C","YOL049W","YOL052C","YOL058W","YOL059W","YOL061W","YOL063C","YOL064C","YOL076W","YOL077C","YOL086C","YOL090W","YOL094C","YOL097C","YOL098C","YOL100W","YOL124C","YOL127W","YOL130W","YOL139C","YOL140W","YOL142W","YOL144W","YOL145C","YOL151W","YOL152W","YOR004W","YOR008C","YOR021C","YOR027W","YOR034C","YOR039W","YOR046C","YOR048C","YOR056C","YOR063W","YOR065W","YOR074C","YOR076C","YOR086C","YOR087W","YOR091W","YOR095C","YOR096W","YOR099W","YOR108W","YOR109W","YOR112W","YOR116C","YOR122C","YOR128C","YOR136W","YOR138C","YOR141C","YOR151C","YOR153W","YOR155C","YOR157C","YOR160W","YOR165W","YOR168W","YOR171C","YOR176W","YOR184W","YOR187W","YOR188W","YOR196C","YOR197W","YOR202W","YOR204W","YOR207C","YOR209C","YOR211C","YOR217W","YOR221C","YOR226C","YOR230W","YOR239W","YOR243C","YOR250C","YOR251C","YOR253W","YOR259C","YOR260W","YOR261C","YOR262W","YOR267C","YOR270C","YOR271C","YOR272W","YOR276W","YOR281C","YOR283W","YOR285W","YOR288C","YOR299W","YOR303W","YOR304W","YOR310C","YOR317W","YOR320C","YOR323C","YOR326W","YOR335C","YOR341W","YOR347C","YOR354C","YOR360C","YOR361C","YOR362C","YOR369C","YOR370C","YOR374W","YOR375C","YPL001W","YPL004C","YPL012W","YPL019C","YPL023C","YPL028W","YPL029W","YPL032C","YPL037C","YPL043W","YPL058C","YPL059W","YPL061W","YPL082C","YPL084W","YPL086C","YPL091W","YPL093W","YPL096W","YPL106C","YPL111W","YPL117C","YPL125W","YPL126W","YPL131W","YPL139C","YPL145C","YPL154C","YPL160W","YPL169C","YPL170W","YPL175W","YPL183C","YPL206C","YPL207W","YPL208W","YPL210C","YPL212C","YPL217C","YPL218W","YPL226W","YPL228W","YPL231W","YPL237W","YPL239W","YPL242C","YPL243W","YPL260W","YPL262W","YPL263C","YPL273W","YPL274W","YPR004C","YPR010C","YPR016C","YPR019W","YPR020W","YPR023C","YPR024W","YPR029C","YPR032W","YPR034W","YPR035W","YPR036W","YPR037C","YPR040W","YPR048W","YPR056W","YPR058W","YPR060C","YPR062W","YPR063C","YPR067W","YPR069C","YPR072W","YPR074C","YPR081C","YPR086W","YPR088C","YPR089W","YPR105C","YPR108W","YPR110C","YPR112C","YPR128C","YPR137W","YPR141C","YPR143W","YPR144C","YPR145W","YPR148C","YPR149W","YPR159W","YPR165W","YPR172W","YPR173C","YPR174C","YPR180W","YPR181C","YPR183W"],"pubmed":["17133367"],"UniProt":["P06208-2","P07263-2","P21269-3","P38431-2","Q12337","R0020C"],"taxonomy":["4932"]}}