{"database":"PeptideAtlas","file_versions":[],"scores":null,"additional":{"submitter":["Sam Hanash"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=346'"],"synonyms":[""],"submitter_email":["","shanash@fhcrc.org"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ FT"],"project_tag":[""],"species":["Mus Musculus"],"publication":[""],"pubmed_abstract":["We present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms and transcript variants not previously predicted from genome analysis."],"pubmed_title":["A mouse plasma peptide atlas as a resource for disease proteomics."],"pubmed_authors":["Zhang Qing Q, Menon Rajasree R, Deutsch Eric W EW, Pitteri Sharon J SJ, Faca Vitor M VM, Wang Hong H, Newcomb Lisa F LF, Depinho Ronald A RA, Bardeesy Nabeel N, Dinulescu Daniela D, Hung Kenneth E KE, Kucherlapati Raju R, Jacks Tyler T, Politi Katerina K, Aebersold Ruedi R, Omenn Gilbert S GS, States David J DJ, Hanash Samir M SM"],"additional_accession":[]},"is_claimable":false,"name":"MmPlasIPAS14_LateStgCaCo","description":"MmPlasma IPAS14 late stage colon cancer vs normal","dates":{"publication":"2008-12-31","export":"2016-03-29"},"accession":"PAe000319","cross_references":{"pubmed":["18522751"],"UniProt":["A1L317","A1L347","A2AE15","A2AEP0","A2AS37","A2CEL1","A2RSZ7","A6BLY7","A6MDD3","A7VMS6","B1AQ77","B1AQ78","B1ARW8","B1ATJ5","B1AVU4","B1B506","B2CQD6","B2RRX1","B2RTP7","B2RU72","B2RV94","B2RWX2","B7ZNS9","B7ZP06","B8JJN0","B9EIX8","C6EQJ5","D3YXF5","D3Z5G7","D3Z6T3","D3Z7M4","D5MCW4","E9PV24","E9PVD2","E9PZ00","E9PZ16","E9Q1Z0","E9Q414","E9Q6C2","E9Q8B5","E9Q8I0","E9QNE5","E9QP56","E9QPB2","F6VAN0","F8WIP8","G3UWG1","G3UZA7","G3X8T9","G3X8W2","G3X977","G3X9D6","G3X9T8","G5E8J0","G5E8M9","H3BL34","H7BWY6","I6L966","I7HJS8","J3QNE8","O08677-2","O08689","O08997","O09049","O09051","O09114","O09164","O35664-3","O70165","O70570","O78207","O88342","O88783","O88947","O88968","O89020","O98032","P00920","P01887","P01897","P01898","P01942","P02088","P02089","P03995","P04104","P04247","P05213","P05784","P06467","P06683","P06728","P07141","P07146","P07361","P07744","P07759","P08121","P08226","P08228","P08607","P08730","P08905","P09803","P09813","P10126","P10639","P10810","P11276","P11404","P11438","P11679","P12246","P12399","P13020","P13595","P13597","P14106","P14206","P15947","P16045","P16882-2","P17156","P17182","P17183","P17879","P20152","P20918","P21460","P21550","P21614","P26039","P26262","P26645","P26928","P27005","P28666","P29533","P29788","P30115","P31532","P31725","P31809-3","P32848","P34928","P35454","P35455","P35917","P39039","P42703-2","P43025","P46412","P47876","P47877","P47878","P47879","P49722","P51437","P51885","P51910","P52430","P52480","P53996-2","P54227","P54728","P55065","P55284","P56395","P56480","P60761","P61957","P61979-2","P62774","P62908","P62983","P63017","P63038","P63242","P70168","P70274","P70349","P97290","P97298","P97300-3","P97321","P97375","P97857","P98064-2","P98086","P99024","Q00519","Q00623","Q00896","Q01279","Q01339","Q01853","Q02819","Q03311","Q03517","Q03734","Q04646","Q05B38","Q05CL2","Q06770","Q06890","Q07456","Q07968","Q08EK4","Q0P635","Q102J0","Q19LI2","Q1ERP8","Q2XN57","Q31141","Q31142","Q31152","Q31190","Q3KQQ2","Q3SXB8","Q3SYP5","Q3TJ94","Q3TS44","Q3TU64","Q3TVS6","Q3U9N4","Q3UBS3","Q3UEK1","Q3UEK9","Q3UEM7","Q3UER1","Q3UJ36","Q3UJG0","Q3UMM1","Q3UPK6","Q3UQV0","Q3UTR7","Q3UV17","Q3UW56","Q3UWC2","Q3V2T4","Q3V3W7","Q497I4","Q4KN89","Q4LDF6","Q543C5","Q543J5","Q544C7","Q545J3","Q546G4","Q54A77","Q566I6","Q5EBQ2","Q5F1Z8","Q5M9M1","Q5M9P7","Q60590","Q60805","Q60994","Q61129","Q61171","Q61247","Q61268","Q61406","Q61599","Q61641","Q61704","Q61730","Q61781","Q61782","Q61892","Q61897","Q64454","Q64695","Q64726","Q66JR8","Q6GQT1","Q6IFX2","Q6LD55","Q6NXH9","Q6NXM5","Q6PI17","Q6S9I3","Q6YJU2","Q792Z1","Q80YC5","Q80YX1","Q8BH35","Q8BH95","Q8BHC0","Q8BND5","Q8BPB5","Q8BPE7","Q8BTE6","Q8CIF4","Q8JZR2","Q8K0E8","Q8K159","Q8K182","Q8K394","Q8QZR4","Q8R121","Q8R3T4","Q8VC41","Q8VCG4","Q8VCU2","Q8VED5","Q91X22","Q91X70","Q91X72","Q91XL1","Q921W8","Q9CPN9","Q9CPX4","Q9CW47","Q9CZT5","Q9DAK9","Q9DBB9","Q9DBD0","Q9DBT1","Q9DCV7","Q9ERD7","Q9ESB3","Q9ESY9","Q9ET01","Q9JJH1","Q9JJN5","Q9JJU8","Q9QUK9","Q9QUM9","Q9QWL7","Q9QX30","Q9QZD9","Q9R0H5","Q9WTR5","Q9WUB3","Q9WVA4","Q9WVJ3","Q9Z0M9","Q9Z1R3","Q9Z1R9","Q9Z1W4","Q9Z2T6","Q9Z2X1","S4R1W1"],"IPI":["-","Gm7298","Gm8055","Gm8815;LOC100505163","Gm9034","Krt5","LOC100503273","Mup-ps21"],"Ensembl":["ENSMUSG00000057465","ENSMUSG00000072849"]}}