PeptideAtlasSam HanashTPP'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=346'shanash@fhcrc.orgPeptideAtlasProteomicsLTQ FTMus MusculusWe present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms and transcript variants not previously predicted from genome analysis.A mouse plasma peptide atlas as a resource for disease proteomics.Zhang Qing Q, Menon Rajasree R, Deutsch Eric W EW, Pitteri Sharon J SJ, Faca Vitor M VM, Wang Hong H, Newcomb Lisa F LF, Depinho Ronald A RA, Bardeesy Nabeel N, Dinulescu Daniela D, Hung Kenneth E KE, Kucherlapati Raju R, Jacks Tyler T, Politi Katerina K, Aebersold Ruedi R, Omenn Gilbert S GS, States David J DJ, Hanash Samir M SMfalseMmPlasIPAS14_LateStgCaCoMmPlasma IPAS14 late stage colon cancer vs normal2008-12-312016-03-29PAe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m7298Gm8055Gm8815;LOC100505163Gm9034Krt5LOC100503273Mup-ps21ENSMUSG00000057465ENSMUSG00000072849