{"database":"PeptideAtlas","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fasta":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_4854_searchdatabase_tandem.fasta"],"Other":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_Search_Results_4854_201106271415.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_Search_Results_4854_201106271415.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_4854_search.params.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_mzXML_201104200101.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_README","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_4854_tandem.params","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_mzXML_201104200101.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_prot_4854_201106271418.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000321/PAe000321_prot_4854_201106271418.properties"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"submitter":["Sam Hanash"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=348'"],"synonyms":[""],"submitter_email":["","shanash@fhcrc.org"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ Orbitrap"],"project_tag":[""],"species":["Mus Musculus"],"publication":[""],"pubmed_abstract":["We present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms and transcript variants not previously predicted from genome analysis."],"pubmed_title":["A mouse plasma peptide atlas as a resource for disease proteomics."],"pubmed_authors":["Zhang Qing Q, Menon Rajasree R, Deutsch Eric W EW, Pitteri Sharon J SJ, Faca Vitor M VM, Wang Hong H, Newcomb Lisa F LF, Depinho Ronald A RA, Bardeesy Nabeel N, Dinulescu Daniela D, Hung Kenneth E KE, Kucherlapati Raju R, Jacks Tyler T, Politi Katerina K, Aebersold Ruedi R, Omenn Gilbert S GS, States David J DJ, Hanash Samir M SM"],"additional_accession":[]},"is_claimable":false,"name":"MmPlasIPAS20_2_LateStgBrCa","description":"MmPlasma IPAS20_2 late stage breast cancer vs normal","dates":{"publication":"2008-12-31","export":"2016-03-29"},"accession":"PAe000321","cross_references":{"pubmed":["18522751"],"UniProt":["A0A5E1","A0JLY3","A1A557","A1A5B7","A1L2Z1","A1L317","A1L347","A1L353","A2A8L5","A2AE15","A2AEP0","A2APM1","A2AQ53","A2AS37","A2ASS6","A2CEL1","A2CFB8","A2MY50","A2NHM3","A2RSB1","A2RSS6","A2RSS9","A2RSZ7","A2RT24","A3KML3","A4FU62","A5GZX3","A6BLY7","A6H6E2","A6MDD3","A6ZI44","A7VMS6","A8IP69","B1AQ77","B1AQ78","B1ARW8","B1ATJ5","B1AVU4","B1AWB9","B1AWD8","B1B506","B2CQD6","B2MWM9","B2RPV6","B2RQQ8","B2RR15","B2RRC9","B2RRE0","B2RRX1","B2RS82","B2RTB0","B2RTL5","B2RTL6","B2RTP7","B2RU72","B2RV94","B2RWX2","B2RXR1","B2RXY7","B2RY11","B2RY37","B4YB45","B7STB7","B7ZN20","B7ZN28","B7ZNB1","B7ZNS9","B7ZNZ9","B7ZP06","B8JJN0","B9EIX8","B9EK76","D0EW11","D2YW38","D3YVW2","D3YXF5","D3YXK2","D3YYZ2","D3Z085","D3Z0P3","D3Z3L7","D3Z536","D3Z566","D3Z5G7","D3Z6I8","D3Z6Q9","D3Z7M4","E5RKF9","E9PV24","E9PVD2","E9PYH0","E9PZ00","E9PZ16","E9PZF0","E9Q035","E9Q092","E9Q0B5","E9Q0X4","E9Q1D6","E9Q1Z0","E9Q2P1","E9Q2T3","E9Q328","E9Q3P4","E9Q414","E9Q415","E9Q453","E9Q529","E9Q557","E9Q5J9","E9Q6C2","E9Q748","E9Q7X6-2","E9Q827","E9Q8B5","E9Q8I0","E9QAZ2","E9QJT5","E9QNE5","E9QP56","E9QPB2","E9QPK1","E9QPU1","E9QQ18","F6R7E8","F6VAN0","F6WR04","F7DCU7","F8VQ07","F8VQD7","F8WGK6","F8WID5","F8WIP8","G3UWG1","G3UXZ5","G3UYJ7","G3UZA7","G3X8T3","G3X8T9","G3X8W2","G3X925","G3X952","G3X977","G3X995","G3X9C2","G3X9D6","G3X9I1","G3X9J0","G3X9T8","G5E846","G5E8J0","G5E8T9","G5E8Z6","H3BL34","H7BWY6","I6L966","J3QN85","J3QNE8","J3QQ13","J3QQ16","K3W4L7","K3W4N7","K4DI77","L7N238","O08677-2","O08689","O08692","O08709","O08742","O08762","O08795-2","O08997","O09051","O09114","O09131","O09159","O09164","O19455","O19476","O35127","O35188","O35215","O35305","O35381","O35451","O35490","O35641","O35664-3","O35737","O54962","O55042","O55111","O55188","O70165","O70250","O70251","O70400","O70456","O70570","O78207","O88271","O88593","O88653","O88783","O88803","O88844","O88947","O88968","O89020","O89051","O89053","O89086","O89103","O98032","P00683","P00687","P00688","P00920","P01193","P01592","P01675","P01844","P01872","P01887","P01896","P01897","P01898","P01900","P01942","P02088","P02089","P02815","P03995","P04104","P04117","P04202","P04223","P04247","P04919","P04925","P05063","P05201","P05213","P05784","P05977","P06342","P06467","P06683","P06728","P06796","P06801","P06869","P07141","P07146","P07214","P07309","P07356","P07361","P07744","P07759","P07901","P08071","P08121","P08226","P08228","P08249","P08607","P08730","P08905","P09041","P09242","P09411","P09528","P09803","P09813","P10126","P10493","P10518","P10639","P10649","P10810","P11247","P11276","P11352","P11404","P11499","P11672","P11679","P12246","P12399","P12710","P12804","P13020","P13597","P13634","P13707","P14106","P14152","P14426","P14432","P15105","P15327","P15535","P15626","P16014","P16015","P16045","P16460","P16882-2","P17156","P17182","P17183","P17563","P17742","P17751","P17879","P17897","P18181","P18760","P19157","P19228","P19639","P19788","P19973","P20152","P20918","P21107","P21180","P21460","P21550","P21570","P21614","P23927","P24270","P24547","P24549","P25119","P26039","P26040","P26041","P26262","P26339","P26645","P26883","P26928","P27005","P27784","P28063","P28481","P28656","P28666","P28667","P29268","P29341","P29533","P29788","P30115","P30681","P31230","P31532","P31725","P31786","P31809-3","P32848","P33434","P33587","P34022","P34884","P34928","P35441","P35454","P35455","P35505","P35700","P35917","P37889","P39039","P39061-2","P40124","P40142","P42703-2","P43025","P45376","P45591","P46412","P47199","P47791","P47877","P47878","P47879","P47880","P48428","P48678-2","P49182","P49722","P49764","P50404","P50428","P50543","P51125","P51162","P51163","P51437","P51859","P51885","P51910","P52430","P52480","P52760","P55050","P55284","P55849","P55850","P56375","P56395","P56677","P56812","P57774","P58252","P59222","P60840","P60843","P60867","P61957","P62320","P62334","P62631","P62774","P62827","P62918","P62962","P62983","P63017","P63038","P63101","P63158","P63242","P68037","P70124","P70194","P70232-2","P70274","P70333","P70349","P70375","P70389","P70663","P70665","P97290","P97298","P97300-3","P97333","P97336","P97350","P97375","P97765","P97797","P97802","P97807","P97825","P97946","P98063","P98064","P98064-2","P98086","P99024","P99027","Q00623","Q00896","Q01279","Q01339","Q01705","Q01721","Q01853","Q02105","Q02257","Q02357-4","Q02819","Q02862","Q03157","Q03311","Q03401","Q03517","Q03734","Q05816","Q05B38","Q05CL2","Q05KA5","Q06318","Q06770","Q06890","Q07235","Q07456","Q07968","Q08423","Q08761","Q08EE6","Q08EK4","Q0P635","Q0P684","Q0VGR4","Q0VGU4","Q102J0","Q149U7","Q14AE4","Q19LI2","Q1ERP8","Q2HJ09","Q2M4I0","Q2T9H5","Q2XN57","Q31141","Q31142","Q31152","Q31153","Q31170","Q31190","Q3KQQ2","Q3SXB8","Q3SYP5","Q3T9S3","Q3TDI5","Q3TDN8","Q3TDT0","Q3TH01","Q3TJ94","Q3TJG6","Q3TP33","Q3TS44","Q3TU64","Q3TVN6","Q3TVS6","Q3TVT6","Q3TWG5","Q3TWR6","Q3U0T4","Q3U2G2","Q3U339","Q3U4K5","Q3U6G1","Q3U6J9","Q3U6L3","Q3U7H9","Q3U7Z6","Q3U8R9","Q3U9N4","Q3UBS3","Q3UEF5","Q3UEK1","Q3UEK9","Q3UEM7","Q3UER1","Q3UG15","Q3UI46","Q3UIP2","Q3UJ36","Q3UJG0","Q3UKW2","Q3ULQ2","Q3UMM1","Q3UMU9","Q3UNP9","Q3UPV2","Q3UQV0","Q3UR85","Q3UTI7","Q3UTR7","Q3UV17","Q3UW56","Q3UWC2","Q3UZ09","Q3UZA1","Q3V2T4","Q3V3W7","Q3V471","Q497I4","Q4FJR9","Q4FJU3","Q4FJY3","Q4FK36","Q4FK49","Q4FZJ6","Q4FZK2","Q4KL76","Q4KN89","Q4LDF6","Q4VAA2","Q4VAI2","Q53ZT3","Q540D7","Q542G0","Q542H2","Q543C5","Q543J5","Q543M3","Q544C7","Q544G5","Q544R1","Q545G0","Q545I6","Q545J3","Q546G4","Q54A77","Q566I6","Q58ET3","Q5BKQ4","Q5DTQ6","Q5EBQ2","Q5F1Z8","Q5F2I0","Q5FW60","Q5KTQ0","Q5M9P7","Q60590","Q60605","Q60864","Q60963","Q60994","Q60F90","Q60I30","Q61129","Q61152","Q61171","Q61176","Q61245-2","Q61247","Q61268","Q61362","Q61475","Q61477","Q61526","Q61599","Q61641","Q61642","Q61704","Q61730","Q61781","Q61782","Q61805","Q61891","Q61892","Q61896","Q61897","Q61982","Q62009","Q62356","Q62426","Q62523","Q63918","Q63930","Q64262","Q64299","Q64374","Q64442","Q64454","Q64467","Q64695","Q64726","Q64727","Q66JR8","Q66K08","Q6GQT1","Q6IFX2","Q6IFZ8","Q6IME9","Q6LD55","Q6NXH9","Q6NXM5","Q6NZK8","Q6P6I4","Q6PGJ3","Q6PI17","Q6RI64","Q6S9I3","Q6YJU2","Q6ZQ58","Q6ZWQ9","Q6ZWY9","Q711L0","Q78JT3","Q791G4","Q792Z1","Q7TM98","Q7TMJ8","Q7TQ48","Q80SW4","Q80W21","Q80W65","Q80XD8","Q80YC5","Q80YR5","Q80YX1","Q8BG07","Q8BH35","Q8BH95","Q8BHA3","Q8BHC0","Q8BKG3","Q8BMT4","Q8BND5","Q8BPB5","Q8BQ47","Q8BSB7","Q8BSI9","Q8BUG2","Q8BVI4","Q8BZQ2","Q8C0T5","Q8C196","Q8C1C1","Q8C6C9","Q8C7G5","Q8C845","Q8CAP3","Q8CAY6","Q8CF98","Q8CG19","Q8CHP8","Q8CIF4","Q8K0C5","Q8K0E8","Q8K0V9","Q8K159","Q8K182","Q8K1L5","Q8K259","Q8K284","Q8K394","Q8K397","Q8K4G1-2","Q8K558-2","Q8QZR4","Q8QZT1","Q8R016","Q8R0W0","Q8R121","Q8R3T4","Q8VC41","Q8VCG4","Q8VCK7","Q8VCQ8","Q8VCU2","Q8VDD5","Q8VDK1","Q8VED5","Q8VIK5","Q91V80","Q91V98","Q91VK2","Q91VM5","Q91VW3","Q91WP0","Q91WU0","Q91X22","Q91X70","Q91X72","Q91X79","Q91XH5","Q91XL1","Q91XV3","Q91Y47","Q91YK8","Q921W8","Q922B1","Q922Y1","Q99JF8","Q99LX0","Q99M20","Q99M73","Q99PT1","Q9CPN9","Q9CPX4","Q9CPY7","Q9CQ19","Q9CQ52","Q9CQ60","Q9CQC2","Q9CQM5","Q9CR00","Q9CR35","Q9CS42","Q9CW47","Q9CWJ9","Q9CX60","Q9CXN7","Q9CY58-2","Q9CZ44","Q9CZT5","Q9D1H9","Q9D312","Q9D6V8","Q9D7I0","Q9D7I0-2","Q9D8B3","Q9D8C4","Q9D8S9","Q9D967","Q9DAK9","Q9DAR7","Q9DAY9","Q9DB07","Q9DBB9","Q9DBD0","Q9DBG5","Q9DBH5","Q9DBP5","Q9DC11","Q9DCC5","Q9DCQ2","Q9DCV7","Q9DCW4","Q9DD06","Q9EQF5","Q9EQI5","Q9EQR4","Q9ERD7","Q9ESB3","Q9ESY9","Q9JHH6","Q9JHW2","Q9JIX8-4","Q9JJH1","Q9JJN5","Q9JJU8","Q9JKR6","Q9JL35","Q9JMG7","Q9QUK9","Q9QUM9","Q9QUN9","Q9QWK4","Q9QWL7","Q9QX30","Q9QXF8","Q9QZM0","Q9R097","Q9R0H5","Q9R0Y5","Q9R126","Q9R1P0","Q9R1P3","Q9R1Q8","Q9WTP6-2","Q9WV69-2","Q9WVA4","Q9WVJ3","Q9Z0M9","Q9Z1R3","Q9Z1R9","Q9Z1W4","Q9Z1Z0","Q9Z2L6","Q9Z2T6","Q9Z2X1","S4R1W1","V9GXA7"],"IPI":["-","2310039D24Rik","Gm7061","Gm7298","Gm8055","Gm8815;LOC100505163","Gm9034","Krt5","LOC100503273","LOC100505002","LOC636948","Mup-ps21","Rps2-ps5"],"Ensembl":["ENSMUSG00000057465","ENSMUSG00000072849","ENSMUSG00000076586","ENSMUSG00000076591","ENSMUSG00000076695","ENSMUSG00000094546","ENSMUSG00000094652","ENSMUSG00000094930","ENSMUSG00000096833","ENSMUSG00000098814","ENSMUSP00000141097"]}}