PeptideAtlasapplication/xmlftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_4852_searchdatabase_tandem.fastaftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_Search_Results_4852_201106271412.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_4852_tandem.paramsftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_mzXML_201104192204.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_Search_Results_4852_201106271412.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_mzXML_201104192204.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_4852_search.params.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_prot_4852_201106271415.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_READMEftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Mouse/PAe000322/PAe000322_prot_4852_201106271415.tar.gzprimaryOK200Sam HanashTPP'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=349'shanash@fhcrc.orgPeptideAtlasProteomicsLTQ FTMus MusculusWe present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms and transcript variants not previously predicted from genome analysis.A mouse plasma peptide atlas as a resource for disease proteomics.Zhang Qing Q, Menon Rajasree R, Deutsch Eric W EW, Pitteri Sharon J SJ, Faca Vitor M VM, Wang Hong H, Newcomb Lisa F LF, Depinho Ronald A RA, Bardeesy Nabeel N, Dinulescu Daniela D, Hung Kenneth E KE, Kucherlapati Raju R, Jacks Tyler T, Politi Katerina K, Aebersold Ruedi R, Omenn Gilbert S GS, States David J DJ, Hanash Samir M SMfalseMmPlasIPAS17_LateStgOvCaMmPlasma IPAS17 late stage ovarian cancer vs normal2008-12-312016-03-29PAe00032218522751A0A5E1A0JLY3A1A557A1L2Z1A1L347A1L353A2A8L5A2AE15A2APM1A2AS37A2ASS6A2AVN2A2CEL1A2CFB8A2NHM3A2RSS9A2RSZ7A2RT24A2RTT4A3KMJ8A4FU62A4FUV6A5GZX3A6ZI44A7VMS6B1AVU4B1B506B2CQD6B2MWM9B2RQQ8B2RRC9B2RRX1B2RTL6B2RTP7B2RU38B2RV94B2RWX2B2RY37B7ZCG3B7ZMW6B7ZN28B7ZNS9B7ZNZ9B7ZP06B8JJN0B9EJ22C6EQJ5D2YW38D3YTT5D3YVW2D3YXF5D3Z3L7D3Z5G7D3Z6I8D3Z6T3D3Z7M4D5MCW4E9PV24E9PVD2E9PZ00E9PZ16E9PZF0E9PZM8E9Q035E9Q092E9Q2P1E9Q414E9Q415E9Q529E9Q6C2E9Q7X6-2E9Q8B5E9Q8I0E9QJS7E9QJT5E9QNE5E9QP56E9QPB2E9QPK1E9QPU1E9QQ18F6R7E8F6VAN0F6WR04F8VQD7F8WGK6F8WIP8G3UWG1G3X8T9G3X8W2G3X924G3X977G3X9D6G3X9T8G5E8J0G5E8J6G5E8T9H3BL34H7BWY6I7HJS8J3QNE8K4DI77O08677-2O08689O08692O08709O08762O08997O09049O09051O09114O09131O09164O19476O35188O35451O35664-3O35744O55042O55188O70165O70251O78207O88569O88593O88783O88803O88839-2O88947O88968O89020O89051O89053O89103O98032P00683P00687P00688P00920P01592P01654P01844P01872P01887P01896P01897P01898P01900P01942P02088P02089P04104P04202P04223P04247P04925P05063P05201P05533P06467P06683P06728P07141P07146P07309P07361P07759P08071P08121P08226P08228P08508P08607P08905P09036P09411P09803P09813P10126P10639P10810P11247P11276P11352P11404P11438P11672P11835P12246P12399P12804P13020P13597P13634P14106P14426P15535P15864P16014P16045P16882-2P17156P17182P17742P17751P17897P18181P18760P19788P19973P20334P20918P21180P21460P21614P22005P24270P25119P26039P26262P26339P26645P26928P27005P27784P28656P28666P28667P29533P29788P31428P31532P31725P31786P31809-3P33434P33587P34022P34884P34928P35230P35441P35454P35455P35700P35917P35951P37889P39039P39061-2P42703-2P43025P43274P43277P45591P45700P46412P47791P47867P47877P47878P47879P47880P49182P49722P50404P50543P51125P51163P51437P51885P51910P52430P52480P53996-2P55065P55284P55849P56395P56812P62196P62631P62774P62983P63017P63101P63242P68037P70194P70274P70349P70375P70389P70663P97290P97298P97300-3P97336P97375P97425P97797P97812P97857P97873P98063P98064P98064-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-2Q8QZR4Q8R121Q8R2K1Q8R3T4Q8VC41Q8VC49Q8VCG4Q8VCK7Q8VCU2Q8VDD5Q8VED5Q8VEN2Q8VIK5Q91V80Q91V98Q91WP0Q91WU0Q91X22Q91X70Q91X72Q91XL1Q91XV3Q91Y47Q924X8Q99LX0Q99PT1Q9CPN9Q9CPX4Q9CPY7Q9CQ60Q9CW47Q9CZ44Q9CZT5Q9D1H9Q9D7I0Q9D7I0-2Q9DBB9Q9DBD0Q9DBH5Q9DBT1Q9DC11Q9DD06Q9EQI5Q9ESB3Q9ESY9Q9JHH6Q9JJH1Q9JJN5Q9JKR6Q9JL79Q9QUK9Q9QUM9Q9QUN9Q9QWK4Q9QX30Q9R0H5Q9R1Q8Q9WTR5Q9WVA4Q9WVJ3Q9Z0M9Q9Z1R3Q9Z1R9S4R1W1-2310039D24RikGm7298Gm8055Gm8815;LOC100505163Gm9034Krt5LOC100503273LOC636948Mup-ps21ENSMUSG00000057465ENSMUSG00000072849