{"database":"PeptideAtlas","file_versions":[],"scores":null,"additional":{"submitter":[""],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=5234'"],"synonyms":[""],"submitter_email":[""],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ"],"project_tag":[""],"species":["Mus Musculus"],"publication":[""],"pubmed_abstract":["E14.Tg2a mouse embryonic stem (mES) cells are a widely used host in gene trap and gene targeting techniques. Molecular characterization of host cells will provide background information for a better understanding of functions of the knockout genes. Using a highly selective glycopeptide-capture approach but ordinary liquid chromatography coupled mass spectrometry (LC-MS), we characterized the N-glycoproteins of E14.Tg2a cells and analyzed the close relationship between the obtained N-glycoproteome and cell-surface proteomes. Our results provide a global view of cell surface protein molecular properties, in which receptors seem to be much more diverse but lower in abundance than transporters on average. In addition, our results provide a systematic view of the E14.Tg2a N-glycosylation, from which we discovered some striking patterns, including an evolutionarily preserved and maybe functionally selected complementarity between N-glycosylation and the transmembrane structure in protein sequences. We also observed an environmentally influenced N-glycosylation pattern among glycoenzymes and extracellular matrix proteins. We hope that the acquired information enhances our molecular understanding of mES E14.Tg2a as well as the biological roles played by N-glycosylation in cell biology in general."],"pubmed_title":["N-glycoproteome of E14.Tg2a mouse embryonic stem cells."],"pubmed_authors":["Sun Bingyun B, Ma Li L, Yan Xiaowei X, Lee Denis D, Alexander Vinita V, Hohmann Laura J LJ, Lorang Cynthia C, Chandrasena Lalangi L, Tian Qiang Q, Hood Leroy L"],"additional_accession":[]},"is_claimable":false,"name":"Mm_mESC_glyco","description":"Mm_mESC_glyco","dates":{"publication":"2013-12-31","export":"2016-03-29"},"accession":"PAe003969","cross_references":{"pubmed":["23405203"],"IPI":["LOC100045292"],"UniProt":["A1L347","A1L366","A2A699","A2A8L5","A2AEE7","A2AI38","A2AMH5","A2AQJ5","A2ARI4","A2ARV4","A2AW86","A2AWF8","A3KG00","A3KML3","A4FUT4","A6MDC5","A7NSI0","A8C1S6","A8Y5F6","A9C437","B0V2N1","B1ARB3","B1AWS8","B1B212","B2RRE0","B2RRF0","B2RRX1","B2RUP8","B2RWT9","B2RX13","B2RXS4","B7ZNJ5","B8JK39","B9EKG3","C9K0Z6","D3YWH4","D3Z4S6","D3Z6W7","E2JF22","E5Q371","E9PUN5","E9PWS4","E9PZ00","E9PZ16","E9PZF0","E9PZM8","E9Q3Q6","E9Q718","E9Q8N2","E9QAQ0","E9QJS7","E9QN70","E9QNX9","F2Z4A3","F6XWA0","F7A1B4","F7BEQ1","F7BJK1","F7DD14","F8VPQ6","F8VQ40","F8VQJ3","G3X8T3","G3X8Y8","G3X9J8","G3XA61","G5E8Q8","H6WCS3","J3QN85","J7IR93","M0QWG8","M0QWP1","O08532-4","O08579","O08602","O09043","O09117-2","O09126","O09159","O35114","O35566","O35598","O35604","O35632","O35684","O35887","O55111","O70251","O70309","O88307","O88792","O89001","O89023","P01831","P04925","P05213","P07901","P08228","P09055","P09242","P09405","P09803","P10126","P10630","P10852-2","P11276","P11438","P11499","P11688","P11881-6","P12265","P13595","P13597","P14094","P14231","P15208","P17156","P17182","P17439","P17809","P17879","P18572-2","P18760","P20352","P21956","P21995","P24638","P24668","P26350","P26645","P27046","P28667","P28843","P31809-3","P32037","P32507","P35441","P35456","P35951","P39061-2","P39098","P41233","P41731","P42703-2","P43406","P45591","P47801","P47911","P47962","P48441","P51569","P52592","P52795","P53986","P55065","P55302","P56528","P56677","P57716","P57787","P58022","P60882","P62259","P63017","P70275","P70302","P70423","P70665","P70699","P97300-3","P97351","P97370","P97449","P97797","P97927","P99024","Q01279","Q06318","Q07113","Q0VEE0","Q148Z6","Q14AX9","Q14BA3","Q1XGY5","Q2EY15","Q2HXL6","Q2WF71","Q3TAS6","Q3TBN1","Q3TC80","Q3TCN2","Q3TCV5","Q3TCZ2","Q3TDQ1","Q3TEW6","Q3TFU8","Q3TPM8","Q3TQH4","Q3TV94","Q3TVT6","Q3TWN7","Q3TWR6","Q3U284","Q3U646","Q3UDW8","Q3UHK6","Q3UIW3","Q3UJ36","Q3UPJ8","Q3UR85","Q3UUQ7","Q3UUY6","Q3UVN4","Q3V1Z5","Q3V2C4","Q3V307","Q3V3R4","Q3ZB19","Q4FK30","Q4FK56","Q4PZA2","Q53WR6","Q542D9","Q543M3","Q544G5","Q571B0","Q5DTL8","Q5DU26","Q5EBP9","Q5FWI3","Q5RKP4","Q5SXR6","Q5U462","Q60715-2","Q60750","Q60I23","Q61001","Q61292","Q61391","Q61468","Q61482","Q61526","Q61576","Q61739-2","Q62179","Q62470","Q64151","Q64676","Q64735","Q69ZJ6","Q69ZN6","Q6DYE8","Q6GQT9","Q6P2L7","Q6P5E4","Q6P5F6","Q6P5F7","Q6P6J9","Q6P9J9","Q6PGJ3","Q6PHU5","Q6PIC6","Q6S5C2","Q6ZQA6","Q75N73","Q80V26","Q80W68","Q80X71","Q80YA8","Q8BFR4","Q8BGV3","Q8BH97","Q8BKG3","Q8BKU8-3","Q8BVF6","Q8BXZ1","Q8BY89-2","Q8BYU6","Q8C0Z1","Q8C129","Q8C145","Q8CG19","Q8CHP4","Q8CIJ3","Q8CIV2","Q8JZL1","Q8K209","Q8K297","Q8K2B0","Q8K2C7-2","Q8K4Q8","Q8R0F3","Q8R143","Q8R2Q8","Q8R2R1","Q8R2Y2","Q8R366","Q8R3H7","Q8R5M8-4","Q8VBZ3","Q8VCI0","Q8VDN2","Q8VEB4","Q8VI56","Q91V87","Q91WD0-2","Q91XV3","Q91XX6","Q99J21","Q99JW5","Q99K86","Q99MB3","Q99MR3","Q9CPW5","Q9CPY7","Q9CQ88","Q9CQW9","Q9CYD3","Q9D6Z1","Q9D7N9","Q9DAY9","Q9DBH5","Q9DBX3","Q9EPS3","Q9ER38","Q9ER41","Q9ES93","Q9ET22","Q9JHJ3","Q9JHP7","Q9JI59","Q9JIS5","Q9JKF6","Q9JKR6","Q9JMI7","Q9QUM9","Q9QUR8","Q9R0E1","Q9R0E2","Q9WTR5","Q9Z0K8","Q9Z0L0","Q9Z247","Q9Z2L6","S4R1W1"]}}