{"database":"PeptideAtlas","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_prot_7942_201501121516.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_prot_7942_201501121516.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_Search_Results_7942_201501121516.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_Search_Results_7942_201501121516.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_mzXML_201501121514.properties","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_README","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_7942_sequest.params","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_wiff_201501121516.tar.gz","ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003976/PAe003976_mzXML_201501121514.tar.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"submitter":["Bundgaard L, Jacobsen S, S�rensen MA, Sun Z, Deutsch EW, Moritz RL, Bendixen E"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=5241'"],"synonyms":[""],"submitter_email":["","kpz684@alumni.ku.dk"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["ABI QSTAR"],"project_tag":[""],"species":["Equus Ferus"],"publication":[""],"pubmed_abstract":["Progress in MS-based methods for veterinary research and diagnostics is lagging behind compared to the human research, and proteome data of domestic animals is still not well represented in open source data repositories. This is particularly true for the equine species. Here we present a first Equine PeptideAtlas encompassing high-resolution tandem MS analyses of 51 samples representing a selection of equine tissues and body fluids from healthy and diseased animals. The raw data were processed through the Trans-Proteomic Pipeline to yield high quality identification of proteins and peptides. The current release comprises 24 131 distinct peptides representing 2636 canonical proteins observed at false discovery rates of 0.2% at the peptide level and 1.4% at the protein level. Data from the Equine PeptideAtlas are available for experimental planning, validation of new datasets, and as a proteomic data mining resource. The advantages of the Equine PeptideAtlas are demonstrated by examples of mining the contents for information on potential and well-known equine acute phase proteins, which have extensive general interest in the veterinary clinic. The extracted information will support further analyses, and emphasizes the value of the Equine PeptideAtlas as a resource for the design of targeted quantitative proteomic studies."],"pubmed_title":["The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research."],"pubmed_authors":["Bundgaard Louise L, Jacobsen Stine S, Sørensen Mette A MA, Sun Zhi Z, Deutsch Eric W EW, Moritz Robert L RL, Bendixen Emøke E"],"additional_accession":[]},"is_claimable":false,"name":"Small_intestine","description":"EQ_D: 10237\nHorse_Number: Horse 1\nAge: 2.5\nBreed: Friesian\nDiagnosis: Chronic lameness\n","dates":{"publication":"2014-12-31","export":"2016-03-29"},"accession":"PAe003976","cross_references":{"pubmed":["24436130"],"UniProt":["A1YAF7","A2Q0Z0","A2Q0Z1","A2Q0Z2","A2Q127","A5YBL8","A8DS41","A8J714","B2B9I8","B2X052","B2X056","B3IVM1","B5BV09","B5BV13","B7XH73","B8K1X7","B8Y403","B9A9Y7","C0KHL3","C4AMK4","C4AYU7","C4B1X4","C6L1J5","C6V3P9","C8BNF6","C8BNF8","C8BNI2","O02682","O97641","O97677","O97973","P00443","P00559","P01959","P02561","P05619","P08906","P08907","P27425","P30441","P35747","P55832","P60708","P62327","P68226","P83704","Q0QEK7","Q0QEQ7","Q0QF32","Q0R0C7","Q0R0C8","Q0R0D4","Q0R0D5","Q1XAA8","Q28372","Q2QLA8","Q2QLB2","Q2TU62","Q30457","Q30482","Q30485","Q30487","Q5YLA8","Q673L7","Q6DTK4","Q6DTK6","Q6L6U2","Q6VCR7","Q6X9X7","Q6X9Y4","Q6X9Y5","Q6X9Y9","Q8HZM6","Q8MKB8","Q8MKB9","Q95479","Q95480","Q95M34","Q9BCX3","Q9BDB6","Q9GKX8","Q9GL82","Q9GM50","Q9N1U8","Q9N1X2","Q9TQS4","Q9TUX5","Q9XS41"],"NCBI":["149692134","149699076","149701611","149701739","149704620","149705551","149707887","149708716","149716389","149720543","149720563","149721245","149721512","149724150","149725904","149726137","149726721","149727487","149727528","149727536","149728227","149728663","149730270","149730849","149731281","149732112","149738517","149751320","149751468","149754742","149757215","149758457","149758776","149760190","149762380","194206090","194207151","194207707","194207743","194207987","194208065","194208541","194208609","194208704","194209096","194209300","194209766","194209876","194209910","194210084","194210270","194210400","194210743","194211250","194211617","194211675","194212026","194212423","194213126","194213355","194214041","194214531","194214808","194214939","194215104","194215180","194215329","194215461","194215756","194215863","194216977","194217874","194218309","194218317","194218724","194218945","194219069","194219220","194219686","194219958","194220672","194221187","194221363","194221612","194222677","194222753","194224452","194224640","194225090","194225092","194226068","194227132","194227564","194238331","194238686","194238726","1942778","230479","255522905","262050622","291476","300373269","300387343","300387355","300387400","300387406","300387449","300387510","300387543","300387632","300387680","300387684","300387720","32331167","42528293","484940","488146","576647","9858135"],"Ensembl":["ENSECAG00000000008","ENSECAG00000000066","ENSECAG00000000106","ENSECAG00000000122","ENSECAG00000000207","ENSECAG00000000223","ENSECAG00000000370","ENSECAG00000000375","ENSECAG00000000384","ENSECAG00000000511","ENSECAG00000000548","ENSECAG00000000658","ENSECAG00000000700","ENSECAG00000000716","ENSECAG00000000782","ENSECAG00000000792","ENSECAG00000000817","ENSECAG00000000841","ENSECAG00000000939","ENSECAG00000001469","ENSECAG00000001500","ENSECAG00000001810","ENSECAG00000001849","ENSECAG00000001897","ENSECAG00000002082","ENSECAG00000002087","ENSECAG00000002201","ENSECAG00000002353","ENSECAG00000002380","ENSECAG00000002541","ENSECAG00000002544","ENSECAG00000002920","ENSECAG00000003079","ENSECAG00000003103","ENSECAG00000003229","ENSECAG00000003345","ENSECAG00000003398","ENSECAG00000003428","ENSECAG00000003601","ENSECAG00000004180","ENSECAG00000004201","ENSECAG00000004311","ENSECAG00000004671","ENSECAG00000004871","ENSECAG00000004903","ENSECAG00000004908","ENSECAG00000004911","ENSECAG00000004925","ENSECAG00000004960","ENSECAG00000004973","ENSECAG00000005090","ENSECAG00000005292","ENSECAG00000005457","ENSECAG00000005550","ENSECAG00000005660","ENSECAG00000006045","ENSECAG00000006095","ENSECAG00000006184","ENSECAG00000006203","ENSECAG00000006429","ENSECAG00000006452","ENSECAG00000006472","ENSECAG00000006474","ENSECAG00000006493","ENSECAG00000006692","ENSECAG00000006745","ENSECAG00000006885","ENSECAG00000006930","ENSECAG00000006942","ENSECAG00000006944","ENSECAG00000007105","ENSECAG00000007392","ENSECAG00000007626","ENSECAG00000007681","ENSECAG00000007750","ENSECAG00000007787","ENSECAG00000007818","ENSECAG00000007824","ENSECAG00000007942","ENSECAG00000007955","ENSECAG00000008007","ENSECAG00000008048","ENSECAG00000008164","ENSECAG00000008201","ENSECAG00000008221","ENSECAG00000008254","ENSECAG00000008270","ENSECAG00000008312","ENSECAG00000008396","ENSECAG00000008403","ENSECAG00000008502","ENSECAG00000008542","ENSECAG00000008567","ENSECAG00000008615","ENSECAG00000008662","ENSECAG00000008664","ENSECAG00000008678","ENSECAG00000008724","ENSECAG00000008746","ENSECAG00000008772","ENSECAG00000008855","ENSECAG00000008871","ENSECAG00000008944","ENSECAG00000008968","ENSECAG00000008999","ENSECAG00000009039","ENSECAG00000009054","ENSECAG00000009065","ENSECAG00000009069","ENSECAG00000009090","ENSECAG00000009117","ENSECAG00000009145","ENSECAG00000009271","ENSECAG00000009344","ENSECAG00000009383","ENSECAG00000009389","ENSECAG00000009512","ENSECAG00000009556","ENSECAG00000009573","ENSECAG00000009575","ENSECAG00000009632","ENSECAG00000009680","ENSECAG00000009727","ENSECAG00000009738","ENSECAG00000009752","ENSECAG00000009791","ENSECAG00000009937","ENSECAG00000009991","ENSECAG00000010006","ENSECAG00000010007","ENSECAG00000010085","ENSECAG00000010107","ENSECAG00000010157","ENSECAG00000010166","ENSECAG00000010224","ENSECAG00000010239","ENSECAG00000010263","ENSECAG00000010325","ENSECAG00000010333","ENSECAG00000010381","ENSECAG00000010481","ENSECAG00000010532","ENSECAG00000010622","ENSECAG00000010625","ENSECAG00000010644","ENSECAG00000010800","ENSECAG00000010913","ENSECAG00000010970","ENSECAG00000011037","ENSECAG00000011097","ENSECAG00000011162","ENSECAG00000011178","ENSECAG00000011235","ENSECAG00000011289","ENSECAG00000011456","ENSECAG00000011457","ENSECAG00000011466","ENSECAG00000011509","ENSECAG00000011518","ENSECAG00000011541","ENSECAG00000011560","ENSECAG00000011603","ENSECAG00000011670","ENSECAG00000011782","ENSECAG00000011835","ENSECAG00000011837","ENSECAG00000011846","ENSECAG00000011847","ENSECAG00000011858","ENSECAG00000011902","ENSECAG00000011944","ENSECAG00000012096","ENSECAG00000012210","ENSECAG00000012321","ENSECAG00000012350","ENSECAG00000012463","ENSECAG00000012612","ENSECAG00000012677","ENSECAG00000012738","ENSECAG00000012770","ENSECAG00000012780","ENSECAG00000012791","ENSECAG00000012829","ENSECAG00000012882","ENSECAG00000012900","ENSECAG00000012956","ENSECAG00000013037","ENSECAG00000013080","ENSECAG00000013091","ENSECAG00000013127","ENSECAG00000013135","ENSECAG00000013162","ENSECAG00000013303","ENSECAG00000013404","ENSECAG00000013424","ENSECAG00000013481","ENSECAG00000013554","ENSECAG00000013659","ENSECAG00000013671","ENSECAG00000013688","ENSECAG00000013733","ENSECAG00000013788","ENSECAG00000013832","ENSECAG00000013877","ENSECAG00000013896","ENSECAG00000013913","ENSECAG00000013915","ENSECAG00000013962","ENSECAG00000013982","ENSECAG00000014002","ENSECAG00000014009","ENSECAG00000014090","ENSECAG00000014168","ENSECAG00000014178","ENSECAG00000014197","ENSECAG00000014222","ENSECAG00000014271","ENSECAG00000014291","ENSECAG00000014306","ENSECAG00000014339","ENSECAG00000014408","ENSECAG00000014414","ENSECAG00000014429","ENSECAG00000014560","ENSECAG00000014617","ENSECAG00000014653","ENSECAG00000014740","ENSECAG00000014779","ENSECAG00000014846","ENSECAG00000014858","ENSECAG00000014928","ENSECAG00000015040","ENSECAG00000015044","ENSECAG00000015050","ENSECAG00000015089","ENSECAG00000015099","ENSECAG00000015128","ENSECAG00000015137","ENSECAG00000015161","ENSECAG00000015204","ENSECAG00000015209","ENSECAG00000015258","ENSECAG00000015278","ENSECAG00000015459","ENSECAG00000015505","ENSECAG00000015581","ENSECAG00000015757","ENSECAG00000015831","ENSECAG00000015832","ENSECAG00000015838","ENSECAG00000015898","ENSECAG00000015932","ENSECAG00000015944","ENSECAG00000015953","ENSECAG00000015990","ENSECAG00000016168","ENSECAG00000016177","ENSECAG00000016206","ENSECAG00000016278","ENSECAG00000016340","ENSECAG00000016353","ENSECAG00000016475","ENSECAG00000016489","ENSECAG00000016535","ENSECAG00000016654","ENSECAG00000016692","ENSECAG00000016700","ENSECAG00000016874","ENSECAG00000016898","ENSECAG00000016982","ENSECAG00000017006","ENSECAG00000017165","ENSECAG00000017251","ENSECAG00000017256","ENSECAG00000017325","ENSECAG00000017553","ENSECAG00000017645","ENSECAG00000017673","ENSECAG00000017747","ENSECAG00000017802","ENSECAG00000017910","ENSECAG00000017953","ENSECAG00000018093","ENSECAG00000018113","ENSECAG00000018230","ENSECAG00000018272","ENSECAG00000018299","ENSECAG00000018305","ENSECAG00000018318","ENSECAG00000018333","ENSECAG00000018356","ENSECAG00000018459","ENSECAG00000018495","ENSECAG00000018626","ENSECAG00000018659","ENSECAG00000018741","ENSECAG00000018754","ENSECAG00000018845","ENSECAG00000018887","ENSECAG00000018948","ENSECAG00000018949","ENSECAG00000019062","ENSECAG00000019077","ENSECAG00000019178","ENSECAG00000019192","ENSECAG00000019194","ENSECAG00000019274","ENSECAG00000019318","ENSECAG00000019346","ENSECAG00000019363","ENSECAG00000019474","ENSECAG00000019624","ENSECAG00000019671","ENSECAG00000019803","ENSECAG00000019849","ENSECAG00000019862","ENSECAG00000019900","ENSECAG00000019902","ENSECAG00000019927","ENSECAG00000019938","ENSECAG00000019979","ENSECAG00000020136","ENSECAG00000020200","ENSECAG00000020234","ENSECAG00000020252","ENSECAG00000020253","ENSECAG00000020298","ENSECAG00000020378","ENSECAG00000020397","ENSECAG00000020416","ENSECAG00000020419","ENSECAG00000020462","ENSECAG00000020463","ENSECAG00000020501","ENSECAG00000020532","ENSECAG00000020547","ENSECAG00000020633","ENSECAG00000020665","ENSECAG00000020699","ENSECAG00000020813","ENSECAG00000020816","ENSECAG00000020842","ENSECAG00000020931","ENSECAG00000020978","ENSECAG00000021065","ENSECAG00000021116","ENSECAG00000021193","ENSECAG00000021223","ENSECAG00000021241","ENSECAG00000021380","ENSECAG00000021436","ENSECAG00000021478","ENSECAG00000021492","ENSECAG00000021499","ENSECAG00000021530","ENSECAG00000021580","ENSECAG00000021601","ENSECAG00000021615","ENSECAG00000021637","ENSECAG00000021657","ENSECAG00000021658","ENSECAG00000021662","ENSECAG00000021750","ENSECAG00000021773","ENSECAG00000021818","ENSECAG00000021868","ENSECAG00000021882","ENSECAG00000021927","ENSECAG00000021928","ENSECAG00000021956","ENSECAG00000022024","ENSECAG00000022048","ENSECAG00000022118","ENSECAG00000022120","ENSECAG00000022158","ENSECAG00000022334","ENSECAG00000022375","ENSECAG00000022389","ENSECAG00000022426","ENSECAG00000022433","ENSECAG00000022437","ENSECAG00000022438","ENSECAG00000022469","ENSECAG00000022570","ENSECAG00000022579","ENSECAG00000022666","ENSECAG00000022692","ENSECAG00000022693","ENSECAG00000022717","ENSECAG00000023009","ENSECAG00000023178","ENSECAG00000023179","ENSECAG00000023185","ENSECAG00000023189","ENSECAG00000023221","ENSECAG00000023237","ENSECAG00000023269","ENSECAG00000023306","ENSECAG00000023379","ENSECAG00000023455","ENSECAG00000023575","ENSECAG00000023592","ENSECAG00000023762","ENSECAG00000023774","ENSECAG00000023879","ENSECAG00000023932","ENSECAG00000024049","ENSECAG00000024086","ENSECAG00000024205","ENSECAG00000024336","ENSECAG00000024350","ENSECAG00000024418","ENSECAG00000024426","ENSECAG00000024461","ENSECAG00000024544","ENSECAG00000024571","ENSECAG00000024658","ENSECAG00000024700","ENSECAG00000024788","ENSECAG00000024795","ENSECAG00000024967","ENSECAG00000024971","ENSECAG00000024980","ENSECAG00000024991","ENSECAG00000025006","ENSECAG00000025054","ENSECAG00000026816","ENSECAG00000026817","ENSECAG00000026827","ENSECAG00000026874","ENSECAP00000002196","ENSECAP00000002478","ENSECAP00000002761","ENSECAP00000003180","ENSECAP00000003495","ENSECAP00000003570","ENSECAP00000006230","ENSECAP00000006896","ENSECAP00000007368","ENSECAP00000007504","ENSECAP00000008708","ENSECAP00000009429","ENSECAP00000009612","ENSECAP00000010375","ENSECAP00000010796","ENSECAP00000011170","ENSECAP00000011533","ENSECAP00000011563","ENSECAP00000012156","ENSECAP00000012438","ENSECAP00000012696","ENSECAP00000012915","ENSECAP00000013223","ENSECAP00000013624","ENSECAP00000013774","ENSECAP00000014020","ENSECAP00000014308","ENSECAP00000014502","ENSECAP00000014750","ENSECAP00000014917","ENSECAP00000014920","ENSECAP00000015442","ENSECAP00000015561","ENSECAP00000015960","ENSECAP00000016226","ENSECAP00000016423","ENSECAP00000017126","ENSECAP00000017509","ENSECAP00000017987","ENSECAP00000018230","ENSECAP00000018729","ENSECAP00000019386","ENSECAP00000019663","ENSECAP00000019782","ENSECAP00000020257","ENSECAP00000021062","ENSECAP00000021570","ENSECAP00000022599"]}}