PeptideAtlasapplication/xmlftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_prot_7959_201501121526.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_mzXML_201501121520.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_Search_Results_7959_201501121526.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_7959_sequest.paramsftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_Search_Results_7959_201501121526.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_mzXML_201501121520.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_wiff_201501121526.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_READMEftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe003992/PAe003992_prot_7959_201501121526.tar.gzprimaryOK200Bundgaard L, Jacobsen S, S�rensen MA, Sun Z, Deutsch EW, Moritz RL, Bendixen ETPP'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=5257'kpz684@alumni.ku.dkPeptideAtlasProteomicsQSTAR XLEquus FerusProgress in MS-based methods for veterinary research and diagnostics is lagging behind compared to the human research, and proteome data of domestic animals is still not well represented in open source data repositories. This is particularly true for the equine species. Here we present a first Equine PeptideAtlas encompassing high-resolution tandem MS analyses of 51 samples representing a selection of equine tissues and body fluids from healthy and diseased animals. The raw data were processed through the Trans-Proteomic Pipeline to yield high quality identification of proteins and peptides. The current release comprises 24 131 distinct peptides representing 2636 canonical proteins observed at false discovery rates of 0.2% at the peptide level and 1.4% at the protein level. Data from the Equine PeptideAtlas are available for experimental planning, validation of new datasets, and as a proteomic data mining resource. The advantages of the Equine PeptideAtlas are demonstrated by examples of mining the contents for information on potential and well-known equine acute phase proteins, which have extensive general interest in the veterinary clinic. The extracted information will support further analyses, and emphasizes the value of the Equine PeptideAtlas as a resource for the design of targeted quantitative proteomic studies.The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research.Bundgaard Louise L, Jacobsen Stine S, Sørensen Mette A MA, Sun Zhi Z, Deutsch Eric W EW, Moritz Robert L RL, Bendixen Emøke EResearch and Development, Activities, Priorities, domestic horse, Priority, Equus przewalskii f. caballus, Activity, Equus ferus caballus, Peptidomics, Research, Laboratory, horse, Research Priorities, Development and Research, Research Priority, Research Activity, Laboratory Research, Research Activities., Equus przewalskii forma caballus, equinesmall, hypoplasia, intestinal tract., Intestine, tiny, bowel, reduced, underdevelopedBru, human being, Procedures, Activity, Raw, Laboratory, selection process, Mining, number, metazoans, Gene, protein, protein-containing complex, animals, Equus przewalskii forma caballus, Human, peptide, Polypeptides, Techniques, protein polypeptide chains, peptido, Homo sapiens, polypeptide chain, Method, Equus ferus caballus, Studies, horse, Gene Products, Del(8)44H, Animal, Research Activity, protein aggregate, Laboratory Research, Technique, Man, equine, Priorities, Animalia, Svc, Man (Taxonomy), peptides, Research, MS2, Farm Animals, Tissue, Domestic Animal, Domesticated Animal, TPP, proteins, procedures, Domestic, Study, domestic horse, Methodological Studies, Equus przewalskii f. caballus, Text, peptidos, Development and Research, species, Research Priority, Farm, Domesticated Animals, protein complex, Farm Animal, Modern, Proteins, Fluids, total expressed protein, Research Priorities, Procedure, Peptide, presence., Acute onset, polypeptide, Domestic Animals, count in organism, Priority, Fluid, native protein, natural protein, Metazoa, Protein, Research Activities, techniques, Domesticated, tandem MS, Research and Development, Body Fluid, Col4a-1, distinct, MS/MS, Methodological, Methodological Study, human, Body, Activities, Protein Gene Products, multicellular animals, Gene Proteins, Data, Text Mining, Modern Man, Animals, Peptid, Polypeptide, Proteomes, humans, methodologyEquus caballus, Diagnoses and Examination, Antemortem Diagnoses, screening, Postmortem Diagnoses, Antemortem Diagnosis, findings, Domestic Horses, RnBP, number, GlcNAc 2-epimerase, signs, Horse, Domestic, Diagnoses and Examinations, Domestic Horse, Diagnosis, presence, Examination and Diagnoses, Equus przewalskii forma caballus, AGE, Diagnoses, count in organism, N-acetyl-D-glucosamine 2-epimerase, domestic horse, Postmortem, Screenings, Chronic., Equus przewalskii f. caballus, Equus ferus caballus, Mass Screenings, RENBP, Examinations and Diagnoses, cardinality, animal breed, horse, Mass, symptoms, renin-binding protein, Screening, Antemortem, Horses, Postmortem Diagnosis, Diagnose, Equus przewalskii, equinefalseSmall_intestineEQ_D: 10237 Horse_Number: Horse 1 Age: 2.5 Breed: Friesian Diagnosis: Chronic lameness 2014-12-312016-03-29PAe00399224436130A2Q0Z0A2Q0Z1A2Q0Z2A5YBL8A8J714B2B9I8B2L2W3B3IVM1B5BV09B5BV13B7XH73B8Y403C0KHL3C4AMK4C4AYU7C6L1J5C6V3P9C8BNF6C8BNF8C8BNI4D2KAT3O02682O77691O97641O97677O97973P00443P00559P01959P02561P05619P08906P27425P35747P60708P62327P63314P68226P83704Q0QEQ7Q0QF32Q1XAA8Q28372Q2QLB2Q2TU62Q673L7Q6DTK4Q6EAS5Q6L6U2Q6VCR7Q6X9Y5Q8HZM6Q8MKB9Q95M34Q9GKX8Q9GM50Q9N1U8Q9N1X2Q9TQS4Q9TUX5Q9XS41Q9XSQ7149689811149692134149698261149699076149701611149702907149704620149705551149707887149708716149716389149720563149721245149721512149724150149726137149726721149727528149727536149727694149728227149728663149730270149730849149731210149731281149731462149732112149732489149738517149743127149751320149751468149754742149758457149758776149760190149762380194206090194206334194206698194207151194207793194208065194208541194208609194208704194209300194209876194209910194210084194210743194211250194211299194211617194211675194212026194213126194213355194214041194214531194214808194214939194215104194215180194215329194215461194216977194217874194218309194218317194218724194219069194220672194221148194221187194221363194221612194222677194222753194224640194225092194225867194226227194227018194227132194227564194228717194238331194238686194238726194277823047925552290526129194129147630038734330038735530038740030038740630038744930038751030038754330038763230038768030038768430038772032331167425282934849404881465766479858135ENSECAG00000000048ENSECAG00000000106ENSECAG00000000122ENSECAG00000000207ENSECAG00000000223ENSECAG00000000314ENSECAG00000000370ENSECAG00000000511ENSECAG00000000548ENSECAG00000000700ENSECAG00000000782ENSECAG00000000817ENSECAG00000000841ENSECAG00000001469ENSECAG00000001810ENSECAG00000002082ENSECAG00000002541ENSECAG00000002544ENSECAG00000002920ENSECAG00000003079ENSECAG00000003345ENSECAG00000003428ENSECAG00000004180ENSECAG00000004201ENSECAG00000004691ENSECAG00000004903ENSECAG00000004911ENSECAG00000004925ENSECAG00000004960ENSECAG00000004973ENSECAG00000005090ENSECAG00000005292ENSECAG00000005469ENSECAG00000005550ENSECAG00000005662ENSECAG00000006095ENSECAG00000006184ENSECAG00000006429ENSECAG00000006452ENSECAG00000006474ENSECAG00000006493ENSECAG00000006660ENSECAG00000006745ENSECAG00000006942ENSECAG00000007105ENSECAG00000007386ENSECAG00000007714ENSECAG00000007787ENSECAG00000007818ENSECAG00000007976ENSECAG00000008007ENSECAG00000008164ENSECAG00000008221ENSECAG00000008270ENSECAG00000008273ENSECAG00000008312ENSECAG00000008396ENSECAG00000008454ENSECAG00000008561ENSECAG00000008615ENSECAG00000008662ENSECAG00000008664ENSECAG00000008678ENSECAG00000008739ENSECAG00000008767ENSECAG00000008772ENSECAG00000008944ENSECAG00000008968ENSECAG00000008981ENSECAG00000009039ENSECAG00000009054ENSECAG00000009065ENSECAG00000009090ENSECAG00000009117ENSECAG00000009178ENSECAG00000009344ENSECAG00000009556ENSECAG00000009573ENSECAG00000009575ENSECAG00000009680ENSECAG00000009738ENSECAG00000009752ENSECAG00000009890ENSECAG00000010006ENSECAG00000010085ENSECAG00000010107ENSECAG00000010325ENSECAG00000010333ENSECAG00000010481ENSECAG00000010532ENSECAG00000010625ENSECAG00000010644ENSECAG00000010800ENSECAG00000010805ENSECAG00000010970ENSECAG00000011037ENSECAG00000011162ENSECAG00000011178ENSECAG00000011541ENSECAG00000011560ENSECAG00000011603ENSECAG00000011670ENSECAG00000011835ENSECAG00000011847ENSECAG00000011858ENSECAG00000011902ENSECAG00000011911ENSECAG00000012080ENSECAG00000012096ENSECAG00000012210ENSECAG00000012321ENSECAG00000012350ENSECAG00000012612ENSECAG00000012738ENSECAG00000012780ENSECAG00000012900ENSECAG00000012956ENSECAG00000012999ENSECAG00000013037ENSECAG00000013127ENSECAG00000013135ENSECAG00000013156ENSECAG00000013252ENSECAG00000013303ENSECAG00000013424ENSECAG00000013481ENSECAG00000013554ENSECAG00000013659ENSECAG00000013788ENSECAG00000013832ENSECAG00000013915ENSECAG00000013962ENSECAG00000013982ENSECAG00000014002ENSECAG00000014009ENSECAG00000014197ENSECAG00000014222ENSECAG00000014224ENSECAG00000014322ENSECAG00000014339ENSECAG00000014346ENSECAG00000014408ENSECAG00000014414ENSECAG00000014429ENSECAG00000014586ENSECAG00000014617ENSECAG00000014653ENSECAG00000014678ENSECAG00000014740ENSECAG00000014846ENSECAG00000014858ENSECAG00000015050ENSECAG00000015071ENSECAG00000015099ENSECAG00000015581ENSECAG00000015711ENSECAG00000015819ENSECAG00000015838ENSECAG00000015932ENSECAG00000015944ENSECAG00000015953ENSECAG00000015965ENSECAG00000015990ENSECAG00000016168ENSECAG00000016206ENSECAG00000016278ENSECAG00000016340ENSECAG00000016475ENSECAG00000016535ENSECAG00000016700ENSECAG00000016874ENSECAG00000016911ENSECAG00000017251ENSECAG00000017325ENSECAG00000017371ENSECAG00000017645ENSECAG00000017687ENSECAG00000017802ENSECAG00000018080ENSECAG00000018093ENSECAG00000018101ENSECAG00000018113ENSECAG00000018147ENSECAG00000018272ENSECAG00000018305ENSECAG00000018318ENSECAG00000018333ENSECAG00000018356ENSECAG00000018459ENSECAG00000018659ENSECAG00000018741ENSECAG00000018845ENSECAG00000018887ENSECAG00000018948ENSECAG00000018949ENSECAG00000019077ENSECAG00000019121ENSECAG00000019157ENSECAG00000019187ENSECAG00000019192ENSECAG00000019194ENSECAG00000019269ENSECAG00000019274ENSECAG00000019671ENSECAG00000019677ENSECAG00000019862ENSECAG00000019900ENSECAG00000019902ENSECAG00000019923ENSECAG00000019927ENSECAG00000019938ENSECAG00000020103ENSECAG00000020136ENSECAG00000020200ENSECAG00000020234ENSECAG00000020252ENSECAG00000020298ENSECAG00000020397ENSECAG00000020416ENSECAG00000020462ENSECAG00000020463ENSECAG00000020547ENSECAG00000020633ENSECAG00000020649ENSECAG00000020816ENSECAG00000020822ENSECAG00000020842ENSECAG00000020978ENSECAG00000021116ENSECAG00000021223ENSECAG00000021380ENSECAG00000021478ENSECAG00000021499ENSECAG00000021580ENSECAG00000021620ENSECAG00000021658ENSECAG00000021662ENSECAG00000021818ENSECAG00000021868ENSECAG00000021882ENSECAG00000022048ENSECAG00000022068ENSECAG00000022120ENSECAG00000022375ENSECAG00000022389ENSECAG00000022421ENSECAG00000022433ENSECAG00000022474ENSECAG00000022570ENSECAG00000022664ENSECAG00000022687ENSECAG00000022692ENSECAG00000022717ENSECAG00000022942ENSECAG00000022985ENSECAG00000023009ENSECAG00000023178ENSECAG00000023185ENSECAG00000023189ENSECAG00000023223ENSECAG00000023237ENSECAG00000023253ENSECAG00000023306ENSECAG00000023455ENSECAG00000023517ENSECAG00000023575ENSECAG00000023592ENSECAG00000023762ENSECAG00000023774ENSECAG00000023879ENSECAG00000023967ENSECAG00000024049ENSECAG00000024086ENSECAG00000024091ENSECAG00000024157ENSECAG00000024205ENSECAG00000024555ENSECAG00000024613ENSECAG00000024652ENSECAG00000024654ENSECAG00000024658ENSECAG00000024788ENSECAG00000024874ENSECAG00000024967ENSECAG00000024971ENSECAG00000024980ENSECAG00000026808ENSECAG00000026827ENSECAG00000026938ENSECAP00000002761ENSECAP00000003180ENSECAP00000003495ENSECAP00000003538ENSECAP00000006230ENSECAP00000006896ENSECAP00000006980ENSECAP00000007368ENSECAP00000007504ENSECAP00000009429ENSECAP00000011200ENSECAP00000011533ENSECAP00000011734ENSECAP00000012156ENSECAP00000012696ENSECAP00000013223ENSECAP00000013624ENSECAP00000014020ENSECAP00000014174ENSECAP00000014717ENSECAP00000014750ENSECAP00000014920ENSECAP00000015561ENSECAP00000016634ENSECAP00000017509ENSECAP00000017987ENSECAP00000019386ENSECAP00000019399ENSECAP00000019663ENSECAP00000020257ENSECAP00000022599