PeptideAtlasapplication/xmlftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_READMEftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_7953_sequest.paramsftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_prot_7953_201501130905.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_prot_7953_201501130905.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_Search_Results_7953_201501130904.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_mzXML_201501130849.propertiesftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_mzXML_201501130849.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_wiff_201501130904.tar.gzftp://ftp.peptideatlas.org/pub/PeptideAtlas/Repository/Horse/PAe004006/PAe004006_Search_Results_7953_201501130904.propertiesprimaryOK200Bundgaard L, Jacobsen S, S�rensen MA, Sun Z, Deutsch EW, Moritz RL, Bendixen ETPP'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=5271'kpz684@alumni.ku.dkPeptideAtlasProteomicsABI QSTAREquus FerusProgress in MS-based methods for veterinary research and diagnostics is lagging behind compared to the human research, and proteome data of domestic animals is still not well represented in open source data repositories. This is particularly true for the equine species. Here we present a first Equine PeptideAtlas encompassing high-resolution tandem MS analyses of 51 samples representing a selection of equine tissues and body fluids from healthy and diseased animals. The raw data were processed through the Trans-Proteomic Pipeline to yield high quality identification of proteins and peptides. The current release comprises 24 131 distinct peptides representing 2636 canonical proteins observed at false discovery rates of 0.2% at the peptide level and 1.4% at the protein level. Data from the Equine PeptideAtlas are available for experimental planning, validation of new datasets, and as a proteomic data mining resource. The advantages of the Equine PeptideAtlas are demonstrated by examples of mining the contents for information on potential and well-known equine acute phase proteins, which have extensive general interest in the veterinary clinic. The extracted information will support further analyses, and emphasizes the value of the Equine PeptideAtlas as a resource for the design of targeted quantitative proteomic studies.The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research.Bundgaard Louise L, Jacobsen Stine S, Sørensen Mette A MA, Sun Zhi Z, Deutsch Eric W EW, Moritz Robert L RL, Bendixen Emøke EBru, human being, Procedures, Activity, Raw, Laboratory, selection process, Mining, number, metazoans, Gene, protein, protein-containing complex, animals, Equus przewalskii forma caballus, Human, peptide, Polypeptides, Techniques, peptido, Homo sapiens, Method, Equus ferus caballus, Studies, horse, Gene Products, Del(8)44H, Animal, Research Activity, protein aggregate, Laboratory Research, Technique, Man, equine, Priorities, Animalia, Svc, Man (Taxonomy), peptides, Research, MS2, Farm Animals, Tissue, Domestic Animal, Domesticated Animal, TPP, procedures, Domestic, Study, domestic horse, Methodological Studies, Equus przewalskii f. caballus, Text, peptidos, Development and Research, species, Research Priority, Farm, Domesticated Animals, protein complex, Farm Animal, Modern, Proteins, Fluids, total expressed protein, Research Priorities, Procedure, Peptide, presence., Acute onset, polypeptide, Domestic Animals, count in organism, Priority, Fluid, native protein, Metazoa, Protein, Research Activities, techniques, Domesticated, tandem MS, Research and Development, Body Fluid, Col4a-1, distinct, MS/MS, Methodological, Methodological Study, human, Body, Activities, Protein Gene Products, multicellular animals, Gene Proteins, Data, Text Mining, Modern Man, Animals, Peptid, Polypeptide, Proteomes, methodologyVF1, Antemortem Diagnoses, screening, Research Related Injuries, Antemortem Diagnosis, LQT3, findings, Domestic Horses, RnBP, Wound, Injury and Wounds, number, Physical, GlcNAc 2-epimerase, Physical Traumas, Horse, CMD1E, Domestic Horse, Diagnosis, injury, Hb-1, presence, Injuries and Wounds, HBBD, Examination and Diagnoses, Equus przewalskii forma caballus, Diagnoses, CDCD2, trauma, count in organism, N-acetyl-D-glucosamine 2-epimerase, Postmortem, Screenings, Wounds, KRTHB6, traumatic injury, Wounds and Injury, Equus ferus caballus, Mass Screenings, KRTHB1, RENBP, Examinations and Diagnoses, Trauma, animal breed, HH1, horse, Mass, symptoms, Screening, Physical Trauma, Antemortem, IVF, SSS1, Postmortem Diagnosis, hHAKB2-1, Research-Related, Equus przewalskii, equine, CMPD2, Equus caballus, Diagnoses and Examination, hHb6, Postmortem Diagnoses, Injury, PFHB1, ghHkb1, wound, signs, study., Hb1, MNX, Domestic, Diagnoses and Examinations, ICCD, MLN137, Injuries, AGE, domestic horse, Equus przewalskii f. caballus, Traumas, cardinality, renin-binding protein, Research-Related Injuries, Nav1.5, Research-Related Injury, HB1, Horses, HB2, HB6, DiagnoseResearch and Development, Activities, Priorities, domestic horse, Priority, Equus przewalskii f. caballus, Activity, Equus ferus caballus, Peptidomics, Research, Laboratory, horse, Research Priorities, Development and Research, Research Priority, Research Activity, Laboratory Research, Research Activities., Equus przewalskii forma caballus, equineExtremitaet, Research Related Injuries, Injury, Extremity, Wound, Injury and Wounds, extremities, Physical, Tissue, wound, flipper, Physical Traumas, Limb, injury, Injuries and Wounds, Injuries, girdle plus limb or fin, trauma, limb, Limbs, appendage/girdle complex, vertebrata limb, Wounds, appendage-girdle complex, traumatic injury, Wounds and Injury, appendage complex, Traumas, limb sensu vertebrata, Trauma, Research-Related Injuries, simple tissue, Physical Trauma, Research-Related Injury, Research-Related, extremity.falseWound_tissue-limbEQ_D: D4 HB1 Horse_Number: Horse 2 Age: 18 Breed: cross-breed Diagnosis: Enclosed in experimental wound study 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