{"database":"PeptideAtlas","file_versions":[],"scores":null,"additional":{"submitter":["Scheibe M, Arnoult N, Kappei D, Buchholz F, Decottignies A, Butter F, Mann M"],"disease":[""],"software":["TPP"],"full_dataset_link":["'https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ManageTable.cgi?TABLE_NAME=AT_sample&sample_id=6299'"],"synonyms":[""],"submitter_email":["f.butter@imb-mainz.de",""],"tissue":["Others"],"repository":["PeptideAtlas"],"sample_protocol":[""],"data_protocol":[""],"omics_type":["Proteomics"],"pubmed":[""],"instrument_platform":["LTQ Orbitrap XL"],"project_tag":[""],"species":["Homo Sapiens (human)"],"publication":[""],"pubmed_abstract":["Telomeres are actively transcribed into telomeric repeat-containing RNA (TERRA), which has been implicated in the regulation of telomere length and heterochromatin formation. Here, we applied quantitative mass spectrometry (MS)-based proteomics to obtain a high-confidence interactome of TERRA. Using SILAC-labeled nuclear cell lysates in an RNA pull-down experiment and two different salt conditions, we distinguished 115 proteins binding specifically to TERRA out of a large set of background binders. While TERRA binders identified in two previous studies showed little overlap, using quantitative mass spectrometry we obtained many candidates reported in these two studies. To test whether novel candidates found here are involved in TERRA regulation, we performed an esiRNA-based interference analysis for 15 of them. Knockdown of 10 genes encoding candidate proteins significantly affected total cellular levels of TERRA, and RNAi of five candidates perturbed TERRA recruitment to telomeres. Notably, depletion of SRRT/ARS2, involved in miRNA processing, up-regulated both total and telomere-bound TERRA. Conversely, knockdown of MORF4L2, a component of the NuA4 histone acetyltransferase complex, reduced TERRA levels both globally and for telomere-bound TERRA. We thus identified new proteins involved in the homeostasis and telomeric abundance of TERRA, extending our knowledge of TERRA regulation."],"pubmed_title":["Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators."],"pubmed_authors":["Scheibe Marion M, Arnoult Nausica N, Kappei Dennis D, Buchholz Frank F, Decottignies Anabelle A, Butter Falk F, Mann Matthias M"],"pubmed_title_synonyms":["Non-Polyadenylated RNA, Doublesex-like 2 protein, ribonucleic acid, Acid, count in organism, RNA, Ribonucleic, Terra., ribose nucleic acid, yeast nucleic acid, Ribonukleinsaeure, Non Polyadenylated RNA, Gene Products, number, ribonucleic acids, pentosenucleic acids, Non-Polyadenylated, Ribonucleic acids, RNS, Ribonucleic Acid, Non Polyadenylated, presence, RNA Gene Products"],"description_synonyms":["RNA, Ribonucleic, dTAF[[II]]230, TAF[[II]]250, d230, human being, Experiment., ribose nucleic acid, Modern, ribonucleic acids, TAF200, l(3)84Ab, dTAFII250, RNS, BG:DS00004.13, TAFII-250, TAF250/230, EfW1, Cell, Human, dTAF230, dmTAF[[II]]230, TAFII250, Homo sapiens, dmTAF1, Taf230, p230, yeast nucleic acid, Ribonukleinsaeure, Gene Products, TAF[[II]]250/230, TFIID, pentosenucleic acids, Ribonucleic acids, Man, Non Polyadenylated, RNA Gene Products, TAF250, Taf[[II]]250, ribonucleic acid, Acid, Taf200, dTAF[[II]]250, TAF[[II]]230, Man (Taxonomy), TFIID TAF250, cel, cell, Non Polyadenylated RNA, Non-Polyadenylated, Taf1p, TAF[II]250, Ribonucleic Acid, CG17603, TAF[[II]], human, Non-Polyadenylated RNA, dTAF250, DmelCG17603, Taf250, SR3-5, Modern Man, TAF, TAF230, TAF1"],"name_synonyms":["Doublesex-like 2 protein, Terra."],"pubmed_abstract_synonyms":["Ribonucleic, IPP2A2, Ghrfr, Materials, telomere, determination, acetylglucosaminyltransferase-like protein, miRNA-mediated gene silencing, Mbp1, Social Controls, 5730420M11Rik, dmTAF[[II]]230, halite, heterochromatin formation involved in chromatin silencing at centromere outer repeat region, ionic compounds, ARS2, Ars2, Post Transcriptional, nuclear chromosome, Msal-1, heterochromatin assembly involved in chromatin silencing at pericentric region, Analysis, myd, Non Polyadenylated, Formal Social Controls, RNA Gene Products, ars2, Mass Spectrum Analysis, SET, TFIID TAF250, like-acetylglucosaminyltransferase, Analyses, cel, TAF-I, Salt, hypoplasia, Mbp-1, Msal, heterochromatin assembly involved in chromatin silencing at centromere outer repeat region, quelling, Sid393p, sel, Salz, salts, DmelCG4299, Social, cloruro sodico, salt, IGAAD, set, Gene Silencings, heterochromatic silencing, heterochromatin assembly involved in chromatin silencing, DmelCG10574, establishment of heterochromatin architecture involved in chromatin silencing at centromere outer repeat region, INSDC_feature:telomere, miRNA biogenesis, phapii, dTAF[[II]]230, rock salt, ribose nucleic acid, gyltl1b-b, ribonucleic acids, TAF200, StF-IT-1, lit, TAFII-250, TAF250/230, telomeric sequence, Spectrum Analysis, Spectroscopy, TAFII250, common salt, positive regulation of homeostatic process, MDDGA6, Ribonukleinsaeure, mKIAA0609, LRRG00119, pentosenucleic acids, Genetic Materials, overlap, Ribonucleic acids, KIAA0609, RNA Silencing, acetylglucosaminyltransferase-like 1A, Genetic Material, Post-Transcriptional Gene, little, fg, Acid, Epistemology, gyltl1b, HLA-DR-associated protein II, Spalt, DI-2, 2810019G02Rik, ionic compound, I-2Dm, mdc1d, Spectrometry, Control, anon-WO0118547.166, CG4299, srrt, MORFL2, Controls, CG17603, natrii chloridum, Co Suppression, TAF[[II]], LARGE_HUMAN, Post Transcriptional Gene Silencing, I-2PP1, MDC1D, TAF-IBETA, Gene Silencing, enr, Taf250, Material, SR3-5, heterochromatin formation involved in chromatin silencing at pericentric region, telomeric DNA, Cistron, TAF-Ibeta, Co-Suppression, mKIAA0026, i2pp2a, Regulation, TAF230, Regulations, serrate, post-transcriptional gene silencing by RNA, d230, telomeric region, production of microRNAs, ASR2D, ASR2B, Peptidomics, ASR2C, number, Gene, dTAFII250, ASR2A, Spectrum Analyses, EfW1, presence, LARGE1, froggy, PHAPII, Gyltl1a, 2410017O14Rik, reduced, dmTAF1, Taf230, Gene Products, Mass, tiny, production of microRNAs involved in gene silencing by microRNA, Mass Spectroscopy, Terra, TAF250, Taf200, telomeres, dTAF[[II]]250, Genetic, cell, MDDGB6, ligand, ipp2a2, Mrgx, chlorure de sodium, 2pp2a, Taf1p, LARGE, Cosuppression, CG10574, Non-Polyadenylated RNA, DmelCG7843, dTAF250, BPFD#36, 2PP2A, taf-ibeta, sels, Kochsalz, dSET, dSet, negative regulation of homeostatic process, production of miRNAs, MRGX, establishment of heterochromatic silencing, TAF, small, Autoregulation, RNA, TAF[[II]]250, Social Controls., Formal Social Control, sales, Proteins, igaad, posttranscriptional gene silencing by siRNA, l(3)84Ab, microRNA-mediated gene silencing, RNS, BG:DS00004.13, cosuppression, Cistrons, Cell, group, dTAF230, RNAi, count in organism, MS, Experiment, Interference, TIP60 histone acetyltransferase complex, Natriumchlorid, I-2PP2A, Social Control, yeast nucleic acid, p230, Protein, Dm I-2, chemical analysis, I2PP2A, Telomeres, TAF[[II]]250/230, TFIID, table salt, background, NaCl, regulation of homeostatic process, Mass Spectrum Analyses, Silencing, Sal, regulation of telomere length, Post-Transcriptional Gene Silencings, Taf[[II]]250, ribonucleic acid, Mass Spectrum, ars2-B, ars2-A, miRNA processing, TAF[[II]]230, ensemble, underdeveloped, Posttranscriptional, ASR2, heterochromatin formation involved in chromatin silencing, Posttranscriptional Gene Silencing, Asr2, Non Polyadenylated RNA, Non-Polyadenylated, CG7843, transcriptional gene silencing, establishment of chromatin silencing, B130022O04Rik, TAF[II]250, Salze, Ribonucleic Acid, establishment of heterochromatin architecture involved in chromatin silencing at pericentric region, introduction, sal, Protein Gene Products, Doublesex-like 2 protein, Gene Proteins, dSET/TAF-Ibeta, 2610030F17Rik, Post-Transcriptional, DmelCG17603, gene silencing by miRNA, like-glycosyltransferase, Dietary Sodium, TIP60 histone acetylase complex, regulation, assay, AA407739, Post-Transcriptional Gene Silencing, glycosyltransferase-like protein LARGE1, TAF1"],"additional_accession":[]},"is_claimable":false,"name":"Hs_TERRA_pull-down_SILAC","description":"SILAC-labeled human nuclear cell lysates in an RNA pull-down 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