{"database":"Pride","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Raw":["ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_12_IV_HeLaDC-SIGN_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_10_II_HeLaDC-SIGN_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_01_I_-_onlyv.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_16_IV_A549_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_04_IV_-_onlyv.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_20_IV_HeLaDC-SIGN_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_05_I_A549_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_03_III_-_onlyv.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_07_III_A549_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_17_I_HeLaDC-SIGN_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_14_II_A549_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_15_III_A549_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_13_I_A549_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_11_III_HeLaDC-SIGN_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_02_II_-_onlyv.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_08_IV_A549_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_19_III_HeLaDC-SIGN_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_18_II_HeLaDC-SIGN_UUKV.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_09_I_HeLaDC-SIGN_Mock.raw","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/20170106_EXQ00_FeMe_SA_06_II_A549_Mock.raw"],"Other":["ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015194/txt-20190802T062708Z-001.zip"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"labhead_mail":["meissner@biochem.mpg.de"],"submitter":["Mario Oroshi"],"technology_type":["Mass Spectrometry","Shotgun proteomics"],"software":[""],"submitter_keywords":["Viral glycoprotein interactions","Quantitative proteomics","Adenovirus","Phenuiviridae","Gbf1","Flavivirus","Retrovirus","Coronavirus","Viral assembly","Viral egress","Alphavirus","Rhabdovirus","Viral replication","Hepacivirus","Phlebovirus","Uukuniemi"],"full_dataset_link":["https://www.ebi.ac.uk/pride/archive/projects/PXD015194"],"tissue":["Cell Culture"],"sample_protocol":["For MS analysis, protein samples were reduced, alkylated and tryptically digested as described in (40). In brief, protein samples were reduced with 10 mM dithiotreitol for 30 min at RT followed by alkylation with 55 mM iodoacetamide for 20 min at RT in the dark. Remaining iodoacetamide was quenched with 100 mM thiourea. Proteins were digested with 1 μg LysC (Wako Chemicals) at RT for 3 h and 1 μg trypsin (Sigma) at RT overnight. Protein digestion was stopped with 0.6 % (v/v) trifluoroacetic acid and 2 % (v/v) acetonitrile before peptides were loaded onto reversed phase C18 StageTips (3MTM EmporeTM, IVA Analysentechnik). Peptides were desalted using 0.5 % (v/v) acetic acid and subsequently eluted from the C18 StageTips with 50 μL80 % (v/v) acetonitrile in 0.5 % (v/v) acetic acid. After concentrating and drying in a SpeedVac (Thermo Scientific), peptides were resuspended in 10 μL 2 % (v/v) acetonitrile, 0.1 % (v/v) trifluoroacetic acid in 0.5 % (v/v) acetic acid and stored at -20°C until mass spectrometric analysis."],"repository":["Pride"],"quantification_method":["Not available"],"modification":[""],"data_protocol":["Mass Spectrometric Analysis including Database Search Parameters and Acceptance Criteria for Identifications Peptide mixtures were analyzed in a single-run liquid chromatography mass spectrometry (LC-MS/MS) format as described in (35). In brief, peptides were separated using a nanoflow UHPLC instrument (EASY-nLC 1200, Thermo Scientific). Separated peptides were analyzed on a benchtopquadrupole-Orbitrap instrument (Q Exactive HF mass spectrometer, Thermo Scientific) with a nanoelectrospray ion source (Thermo Scientific), which was coupled on-line to the liquid chromatography instrument. MS data were acquired as described previously using the Xcalibur software (Thermo Scientific). Protein identification and quantification from MS raw files was performed using the computational proteomics platform MaxQuant (software version 1.5.5.2). Match-between runs 
was enabled and additional GN/GC co-IP samples from HeLacells incubated with purified UUKV or mock supernatants were acquired, which served as peptide matching reference.The MS/MS spectra were searched against the human UniProtKB FASTA database (92,013 forward entries including isoforms; version from December 2015) and a common contaminant database (247 entries) by the implemented Andromeda search engine with a false discovery rate (FDR) of 1 % at peptide and protein level (41,42). To identify the UUKV viral proteins L, N, GN and GC in the peptide mixtures, the MS/MS spectra were additionally searched against the corresponding FASTA files for these four viral proteins.Additionally, hits were checked against the Crapomecontaminant repository (43). The protease configuration in the Andromeda search engine was set to “Trypsin/P” allowing cleavage at the carboxyl side of the amino acids lysine or arginine (also if a proline follows) with a maximum of twomissed cleavages. Carbamidomethylation was set as a fixed modification and acetylation (N terminus) as well asmethionine oxidation were set as variable modifications. Initial precursor mass deviation of up to 4.6 ppm and fragment mass deviation up to 20 ppm were allowed. Inclusion criteria were set to at least one unique or razor peptide with a minimum length of 7 amino acids per protein group. Protein identification required at least one razor peptide and proteins that could not be discriminated on the basis of unique peptides were grouped into protein groups. For protein quantification, MaxLFQ algorithms were used (44)."],"omics_type":["Proteomics"],"labhead":["Felix Meissner"],"instrument_platform":[""],"labhead_affiliation":["Experimental Systems Immunology,  Max Planck Institute of Biochemistry"],"submission_type":["PARTIAL"],"species":["Homo Sapiens (human)"],"submitter_mail":["oroshi@biochem.mpg.de"],"publication":["31570497 Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G. Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses. Mol Cell Proteomics. 2019 10.1074/mcp.ra119.001631"],"curator_keywords":["Biological","Biomedical"],"submitter_affiliation":["Proteomics"],"submitter_country":["Germany"],"pubmed_abstract":["Novel tick-borne phleboviruses in the <i>Phenuiviridae</i> family, which are highly pathogenic in humans and all closely related to Uukuniemi virus (UUKV), have recently emerged on different continents. How phleboviruses assemble, bud, and exit cells remains largely elusive. Here, we performed high-resolution, label-free mass spectrometry analysis of UUKV immunoprecipitated from cell lysates and identified 39 cellular partners interacting with the viral envelope glycoproteins. The importance of these host factors for UUKV infection was validated by silencing each host factor by RNA interference. This revealed Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (GBF1), a guanine nucleotide exchange factor resident in the Golgi, as a critical host factor required for the UUKV life cycle. An inhibitor of GBF1, Golgicide A, confirmed the role of the cellular factor in UUKV infection. We could pinpoint the GBF1 requirement to UUKV replication and particle assembly. When the investigation was extended to viruses from various positive and negative RNA viral families, we found that not only phleboviruses rely on GBF1 for infection, but also <i>Flavi</i>-, <i>Corona</i>-, <i>Rhabdo</i>-, and <i>Togaviridae</i> In contrast, silencing or blocking GBF1 did not abrogate infection by the human adenovirus serotype 5 and immunodeficiency retrovirus type 1, the replication of both requires nuclear steps. Together our results indicate that UUKV relies on GBF1 for viral replication, assembly and egress. This study also highlights the proviral activity of GBF1 in the infection by a broad range of important zoonotic RNA viruses."],"pubmed_title":["Quantitative Proteomics of Uukuniemi Virus-host Cell Interactions Reveals GBF1 as Proviral Host Factor for Phleboviruses."],"pubmed_authors":["Uckeley Zina M ZM, Moeller Rebecca R, Kühn Lars I LI, Nilsson Emma E, Robens Claudia C, Lasswitz Lisa L, Lindqvist Richard R, Lenman Annasara A, Passos Vania V, Voss Yannik Y, Sommerauer Christian C, Kampmann Martin M, Goffinet Christine C, Meissner Felix F, Överby Anna K AK, Lozach Pierre-Yves PY, Gerold Gisa G"],"sample_synonyms":["Hac-1/Dark, rac-Dithiothreitol, E-260, MeCN, Dapaf-1/HAC-1, NCMe, determination, threo-1, Vinegar, Cleland's reagent, DmelCG6829, Degradation, FBN, Gene, CH3-COOH, Essigsaeure, protein, protein-containing complex, Apaf-1, CG7826, Alkylations, Dark/Hac-1/dApaf1, Trifluoroacetate, Polypeptides, Methanecarboxylic acid, Hac1, Dark/Hac-1/dApaf-1, E260, peptido, reduced, Glacial Acetic Acid, ECTOL1, CH3-C#N, B1, Gene Products, CG7835, CG42273, Min, Apaf1, tiny, protein aggregate, ARK, CH3CO2H, WMS, DmelCG42273, (R*, Cesium Trifluoroacetate, isovaleric acid Coa dehydrogenase deficiency, hac-1, peptides, dapaf-1, beta-Trypsin, hypoplasia, Acetic Acid, min, arc, chemical analysis., mAPC, dapaf, dark, Acetic Acid Glacial, Protein Degradations, ark, Protein Degradation, T1, AI047805, OCTD, marsh elder, DARK, trifluoro-, D1, MeCO2H, ethoic acid, peptidos, dApaf1, dArk, Dapaf-1, GPHYSD2, 2-iodo-, PTHB1, SGS, small, 3-butanediol, dark/dapaf-1/hac-1, DYRK1, AcOH, Degradations, 1-(14)C-labeled, D-Apaf-1, 3H-labeled, protein complex, dApaf-1, Proteins, anon-53Fa, Dmel_CG7826, l(2)SH0173, IVD deficiency, apaf1, 4-dimercapto-2, isovaleryl CoA carboxylase deficiency, backward, Protein Digestion, acetonitrile, Digestions, Thermo Scientific, Dithiothreitol, Peptide, ACMICD, Dithiotreitol, APAF1, Glacial, native protein, HOAc, Dm1, Proteolyses, Hac-1, Digestion, C18, chemical analysis, Protein, DL-threo-1, MFS1, Dyrk1, IVA, Dark, Dark/Apaf-I, CG6829, ACETONITRILE, Dmel_CG7835, Acetic acid, DTL, cyanomethane, WMS2, dark/hac-1/dapaf-1, Mnb, MNB, AU020952, Acid, DTT, PRSS, Ethylic acid, underdeveloped, E 260, Protein Digestions, CC1, Trifluoroacetic, Tripcellim, Dark/Dapaf-1/HAC1, acide acetique, hac1, ethanenitrile, MASS, AW124434, beta Trypsin, dApaf-1/DARK/HAC-1, ME-IV, Protein Gene Products, dapaf-1S, Gene Proteins, R*)-1, Trypure, apaf-1, dapaf-1L, Cesium, MeCOOH, Acetamide, SSKS, Peptid, INS No. 260, assay, Polypeptide, methyl cyanide, 4-Dimercapto-2, dAPAF-1, reversed, Ethanoic acid"],"name_synonyms":["Uukuniemi Group Viruses, host organism, Sandfly Fever Sicilian Virus, CG8487, Peptidomics, SFTS bunyavirus, AW049900, number, ARF1GEF, Pges2, DmelCG8487, ang, presence, Garz, mPGES-2, count in organism, 1700083E03Rik, PGES2, C79137, mKIAA0248, C9orf15, Phleboviruses., GBF1, Gbf1, GBF-1, AI035702, CG 8487, ArfGEF, 0610038H10Rik, RGD1307160, Severe Fever with Thrombocytopenia Syndrome Bunyavirus, Mpges2"],"data_synonyms":["liquid chromatography tandem mass spectroscopy, Bru, IPP2A2, Raw, determination, Lysine Hydrochloride, DL-Arginine Acetate, Aminosaeure, instrument configuration, cleavage, 1.5.5.2, Amino acid, Monohydrate, protein, Prolin, Kidney and liver proline oxidase 1, 5730420M11Rik, peptide, Polypeptides, Lysine Acetate, peptido, L-Proline, 2, Software Engineering, Analysis, Proline oxidase, Arg, protein aggregate, WMS, Computer Program, L Lysine, Mass Spectrum Analysis, Svc, SET, Divorced, (S)-2-amino-5-guanidinopentanoic acid, F, LCMSMS, amino acids, Man (Taxonomy), peptides, Analyses, TAF-I, K, Open, (S)-2-Amino-5-guanidinovaleric acid, P, R, Computer Programs and Programming, epsilon-diaminocaproic acid, HardwareType, Arginine, Divorces, Monohydrate DL-Arginine Acetate, (2S)-pyrrolidine-2-carboxylic acid, PROLINE, Viral Gene Products, DmelCG4299, IGAAD, set, LYS, DmelCG10574, Lysin, ppm, GPHYSD2, SGS, L-Arginin, LC-MS2, phapii, Viral, DL-Proline, Aminokarbonsaeure, Modern, acetylation, Liquid Chromatography, LC-MS/MS, Arginine Hydrochloride, StF-IT-1, arginine, Search, Arginin, Spectrum Analysis, Thermo Scientific, not genetically inherited, Source Softwares, alpha-amino carboxylic acids, Software Tools, ACMICD, Programs, Spectroscopy, Program, Computer Applications, Computer Applications Software, Computer Applications Softwares, lysine, Softwares, L-Arginine, parent ion, Amino Acid, Acid, Software Applications, HLA-DR-associated protein II, Algorithm., Amino acids, instrument, DI-2, prolinum, Source Software, I-2Dm, Spectrometry, common, MASS, CG4299, alpha, (-)-proline, (S)-pyrrolidine-2-carboxylic acid, human, I-2PP1, nanospray, Applications, TAF-IBETA, precursor ion, liquid chromatography-tandem mass spectroscopy, Viral Protein, TAF-Ibeta, Acids, Polypeptide, i2pp2a, L-pyrrolidine-2-carboxylic acid, Gruppe, Computer Software Applications, human being, Peptidomics, False, (-)-(S)-proline, L-alpha-pyrrolidinecarboxylic acid, Aminocarbonsaeure, 2-Amino-5-guanidinovaleric acid, L Isomer, FBN, Gene, Spectrum Analyses, Computer, alpha-amino acid, precursor, protein-containing complex, PHAPII, LC-MS-MS, hardware, Human, L-(+)-arginine, Homo sapiens, (2S)-2-amino-5-(carbamimidamido)pentanoic acid, ECTOL1, Harg, LC-MSMS, pyrrolidine-2-carboxylic acid, Mass, Gene Products, Del(8)44H, Lysine, Proline oxidase-like protein, Separated, Man, Mass Spectroscopy, Application, Open Source Softwares, Search Engines, Hpro, Software Application, ipp2a2, MmPOX1, Open Source Software, 2-Pyrrolidinecarboxylic acid, Acetylations, 2pp2a, CG10574, Computer Software Application, OCTD, (S)-2-pyrrolidinecarboxylic acid, 2PP2A, Tools, 10^[-6], taf-ibeta, grupos, L Proline, dSET, dSet, L-Arg, peptidos, (S)-2-carboxypyrrolidine, 2-amino-5-(carbamimidamido)pentanoic acid, Applications Software, Open Source, Computer Software, grupo, protein complex, prolina, Proteins, igaad, alpha-amino acids, 2-amino-5-guanidinopentanoic acid, L-Isomer, DL Arginine Acetate, Peptide, Engine, Tool, group, polypeptide, LC/MS/MS, Software Tool, Viral Gene Proteins, MS, native protein, I-2PP2A, L-Isomer Arginine, Acetate, chemical analysis, Protein, Dm I-2, I2PP2A, Hydrochloride, proline, MFS1, L Arginine, Software, L-Lysine, Mass Spectrum Analyses, WMS2, Data Base, Mass Spectrum, Separation, (-)-2-pyrrolidinecarboxylic acid, Col4a-1, ensemble, L-Prolin, Separations, (2S)-2-amino-5-guanidinopentanoic acid, Engineering, Rest, Amino, Protein Gene Products, Computer Programs, Gene Proteins, dSET/TAF-Ibeta, 2610030F17Rik, Applications Softwares, Probable proline oxidase 2, Modern Man, SSKS, liquid chromatography tandem mass spectrometry, Peptid, assay, L-(-)-proline, variable, AA407739, 6-diaminohexanoic acid, Enisyl, groupe, PO"],"description_synonyms":["glicoproteinas, Networks, Uukuniemi Group Viruses, Viridae, MGC130048, host organism, Ribonucleic, Synergisidin, viral infectious cycle, O-Glycosylated, RNA Virus, Kinship, Activity, APC Viruses, Infestations and Infections, A4, Stage, Life History, Atomkern, 12, RNA viruses, dmTAF[[II]]230, 13, 14, primordia, mKIAA0248, Glycoprotein, Virus Replications, glycoproteins, Roles, horsetail nucleus, Virus, Post Transcriptional, 1, Concepts, Life Cycle, 6, 7, glycoproteine, 8, 9, APC Virus, Non Polyadenylated, Phleboviruses, C-Glycosylated Proteins, RNA Gene Products, Family Life Cycle, glicoproteina, gamma sarcoglycan, Glykoprotein, neuronal nucleus, nucleus atomi, N-Glycosylated, 4H-Cyclopent(f)oxacyclotridecin-4-one, G, Kinship Network, Man (Taxonomy), TFIID TAF250, cel, Envelope, entire life cycle, NSC89671, quelling, Golgi, 7-dihydro-, free, Cyanein, Gene Silencings, Viral Replications, C9orf15, Vira, AI035702, Role Concepts, bud, viral outside membrane, CG 8487, gamma-sarcoglycan, Infections and Infestations, Family Life Cycles, Glycosylated Protein, Nucleotide, INCURVATA 4, Severe Fever with Thrombocytopenia Syndrome Bunyavirus, Neoglycoproteins, Mpges2, Human Adenovirus, a glycoprotein, dTAF[[II]]230, Viral, Togavirus, wide/broad, ribose nucleic acid, Modern, Togaviruses, ribonucleic acids, SG-gamma, TAF200, NSC-89671, future organ, TAFII-250, 6H-Purin-6-one, TAF250/230, results, 2-Amino-6-hydroxypurine, sigma virus replication, RNA viruses and viroids., 1700083E03Rik, TAFII250, C79137, and release, Role Concept, Ribonukleinsaeure, Human Adenoviruses, Role, pentosenucleic acids, cell nucleus, sarcoglycan, 0610038H10Rik, Ribonucleic acids, Filiation, RNA Silencing, nucleotides, Post-Transcriptional Gene, Acid, Viral Replication, SFTS bunyavirus, Glycosylated, life, Life Cycle Stage, History Stage, Infection and Infestation, lytic viral life cycle, CG17603, Co Suppression, gamma (35kDa dystrophin-associated glycoprotein), TAF[[II]], Post Transcriptional Gene Silencing, Life Cycles, Garz, wide, DMDA, Gene Silencing, GBF1, Gbf1, Replications, Taf250, antagonists and inhibitors, label, SR3-5, 35kD dystrophin-associated glycoprotein, 2-amino-1, Immune deficiency, Virus Envelopes, Animal Viruses, RGD1307160, Decumbin, Co-Suppression, Virus Envelope, humans, TAF230, ATHB15, post-transcriptional gene silencing by RNA, d230, lifespan, noyau atomique, Family Member, C-Glycosylated, CG8487, SGCG_HUMAN, Decreased immune function, Gua, dTAFII250, Kern, Network, broad, EfW1, TYPE, Human, DAGA4, paracorolla, Adenovirus, Homo sapiens, dmTAF1, Taf230, resistance, Cycle, RNA Rodent Viruses, 35DAG, Gene Products, viral replication, Animal, CNA, Life, MAM, gamma-SG, nucleo atomico, SCG3, Man, ICU4, Rodent Viruses, TAF250, nuclei, Cycles, study, Taf200, Animal Virus, 14a-alpha-decahydro-1-beta-13-alpha-dihydroxy-6-beta-methyl-, dTAF[[II]]250, Viruses, Research, cell, entire lifespan, nucleus of CNS, nucleo, noyau, egress, Envelopes, glycoproteines, inhibiteur, RNA Rodent, Taf1p, Ascotoxin, immunodeficiency syndrome, ARF1GEF, Pges2, Cosuppression, clinical infection, O-Glycosylated Proteins, Life History Stages, Non-Polyadenylated RNA, dTAF250, Golgi ribbon, mPGES-2, Infestation and Infection, PGES2, Stages, inhibidor, nucleus, Life History Stage, Kinship Networks, rudiment, TAF, Family, Glykoproteine, inhibitors, RNA, TAF[[II]]250, Family Research, NSC 89671, 35 kDa dystrophin-associated glycoprotein, Proteins, AW049900, posttranscriptional gene silencing by siRNA, maturation, l(3)84Ab, inhibitor, Golgi complex, RNS, BG:DS00004.13, cosuppression, DmelCG8487, Viral Envelopes, Cell, SGCG, LGMD2C, dTAF230, Concept, Family Members, adventitious bud (narrow), RNAi, viruses, 11a-beta, Interference, GBF-1, 2-amino-6-oxopurine, nervous system nucleus, p230, yeast nucleic acid, Protein, Glycosylated Proteins, Infection, TAF[[II]]250/230, TFIID, ArfGEF, Zoophaginae, Replication, Silencing, viral assembly, Post-Transcriptional Gene Silencings, antagonists, Taf[[II]]250, ribonucleic acid, Sandfly Fever Sicilian Virus, TAF[[II]]230, History Stages, CORONA, DMDA1, N-Glycosylated Proteins, Posttranscriptional, Posttranscriptional Gene Silencing, Non Polyadenylated RNA, Non-Polyadenylated, F5F19.21, TAF[II]250, nucleus of neuraxis, Ribonucleic Acid, placode, ang, neuraxis nucleus, F5F19_21, Post-Transcriptional, DmelCG17603, Families, Modern Man, SCARMD2, viral glycoprotein, Post-Transcriptional Gene Silencing, Relatives, General activity, Rodent Virus, RNA Rodent Virus, TAF1"],"pubmed_abstract_synonyms":["Networks, Uukuniemi Group Viruses, Viridae, MGC130048, host organism, Virus Envelope Protein, Ribonucleic, Synergisidin, viral infectious cycle, RNA Virus, Kinship, Activity, APC Viruses, Retrovirus, Infestations and Infections, A4, LaCrosse Virus Envelope Glycoprotein G1, sci, Stage, RNA Tumor, Life History, 12, RNA viruses, dmTAF[[II]]230, 13, 14, Tumor Virus, primordia, mKIAA0248, Virus Replications, Roles, Reversing Factors, Virus, Post Transcriptional, Oncovirus, HOW, How, 1, Concepts, Life Cycle, 6, 7, 8, 9, APC Virus, Non Polyadenylated, l(3)j5D5, Phleboviruses, RNA Gene Products, Family Life Cycle, 24B, gamma sarcoglycan, Type C Oncovirus, GDP Dissociation Stimulators, 4H-Cyclopent(f)oxacyclotridecin-4-one, Kinship Network, Man (Taxonomy), TFIID TAF250, GDP Exchange, cel, entire life cycle, stru, NSC89671, l(3)S053606, quelling, Golgi, CG10293, Serotype, GDP-GTP Exchange Protein, Cyanein, l(3)j5B5, Gene Silencings, Oncoviruses, Viral Replications, C9orf15, Vira, GDP GTP Reversing Factors, AI035702, Virus Peplomer Proteins, Role Concepts, bud, CG 8487, gamma-sarcoglycan, guanine nucleotide exchange factor, Ixodida, Infections and Infestations, Family Life Cycles, INCURVATA 4, Severe Fever with Thrombocytopenia Syndrome Bunyavirus, Type C Oncoviruses, Envelope Proteins, Mpges2, Human Adenovirus, 0904/17, dTAF[[II]]230, Viral, Togavirus, C Oncoviruses, ribose nucleic acid, Bovine Leukemia Virus Glycoprotein gp51, Modern, GDP-GTP Reversing, Togaviruses, ribonucleic acids, SG-gamma, TAF200, Exchange Factors, NSC-89671, future organ, TAFII-250, TAF250/230, sigma virus replication, RNA viruses and viroids., 1700083E03Rik, TAFII250, C79137, and release, Role Concept, Glycoproteins, SZ1, Ribonukleinsaeure, GDP GTP Exchange Protein, Human Adenoviruses, Role, pentosenucleic acids, sarcoglycan, 0610038H10Rik, Ribonucleic acids, Peplomer Proteins, Leukemogenic, Filiation, RNA Silencing, Post-Transcriptional Gene, Acid, Viral Replication, Oncornaviruses, Factors, Type C, SFTS bunyavirus, life, Viral Envelope Glycoproteins, Life Cycle Stage, History Stage, Infection and Infestation, lytic viral life cycle, CG17603, Co Suppression, gamma (35kDa dystrophin-associated glycoprotein), TAF[[II]], Virus Peplomer, Post Transcriptional Gene Silencing, Life Cycles, Garz, DMDA, Gene Silencing, GBF1, Gbf1, Replications, Taf250, antagonists and inhibitors, label, SR3-5, 35kD dystrophin-associated glycoprotein, Viral Envelope Protein, Immune deficiency, anon-EST:Liang-2.39, Animal Viruses, RGD1307160, Decumbin, Guanine-Nucleotide-Releasing Factor, Co-Suppression, Leukemogenic Viruses, Virus Envelope, humans, TAF230, ATHB15, post-transcriptional gene silencing by RNA, d230, lifespan, Family Member, CG8487, SGCG_HUMAN, P62, Decreased immune function, GDP, GDP-GTP Reversing Factors, dTAFII250, Network, Hepatitis Virus (MHV) Glycoprotein E2, EfW1, TYPE, Human, DAGA4, paracorolla, Adenovirus, Virus Envelope Proteins, Homo sapiens, GDP-GTP, dmTAF1, Taf230, Cycle, RNA Rodent Viruses, 35DAG, Gene Products, viral replication, Animal, CNA, Life, Serotypes, MAM, gamma-SG, SCG3, Man, Viral Envelope Proteins gp70, ICU4, Rodent Viruses, TAF250, Cycles, Guanine Nucleotide Releasing Factors, study, Taf200, Animal Virus, 14a-alpha-decahydro-1-beta-13-alpha-dihydroxy-6-beta-methyl-, dTAF[[II]]250, l(3)s2612, Viruses, Research, cell, entire lifespan, egress, inhibiteur, RNA Rodent, Taf1p, Ascotoxin, immunodeficiency syndrome, ARF1GEF, Pges2, clinical infection, Cosuppression, Life History Stages, Non-Polyadenylated RNA, dTAF250, Oncovirinae, Infestation and Infection, Golgi ribbon, mPGES-2, Retroviruses, PGES2, Stages, inhibidor, Serovars, Life History Stage, DmelCG10293, Guanine Nucleotide Exchange Factor, Type, Kinship Networks, rudiment, TAF, Family, Leukemogenic Virus, Viral Envelope Proteins gp52, inhibitors, GDP Dissociation Factor, RNA, TAF[[II]]250, Leukoviruses, Envelope Protein, Family Research, NSC 89671, 35 kDa dystrophin-associated glycoprotein, clone 2.39, Proteins, AW049900, posttranscriptional gene silencing by siRNA, maturation, l(3)84Ab, inhibitor, Golgi complex, RNS, Leukovirus, BG:DS00004.13, qkr, Tick, cosuppression, l(3)S090417, DmelCG8487, Cell, C Oncovirus, SGCG, LGMD2C, dTAF230, Concept, Family Members, adventitious bud (narrow), RNAi, viruses, 11a-beta, Interference, GBF-1, p230, yeast nucleic acid, KH93F, Protein, Viral Envelope, Infection, Oncornavirus, TAF[[II]]250/230, TFIID, Viral Envelope Proteins E1, Viral Envelope Proteins E2, ArfGEF, Zoophaginae, Replication, Silencing, who, viral assembly, Post-Transcriptional Gene Silencings, antagonists, Taf[[II]]250, ribonucleic acid, Sandfly Fever Sicilian Virus, TAF[[II]]230, History Stages, CORONA, DMDA1, Simian Sarcoma Virus Glycoprotein 70, Ixodidas, Posttranscriptional, Posttranscriptional Gene Silencing, Viral Envelope Glycoprotein gPr90 (Murine Leukemia Virus), Non Polyadenylated RNA, RNA Tumor Viruses, Non-Polyadenylated, F5F19.21, TAF[II]250, Who/How, Ribonucleic Acid, placode, Guanine Nucleotide Releasing Factor, ang, Serovar, F5F19_21, Post-Transcriptional, Serogroups, DmelCG17603, Families, Modern Man, SCARMD2, qkr[93F], Tumor Viruses, RNA Tumor Virus, Post-Transcriptional Gene Silencing, Relatives, General activity, Rodent Virus, RNA Rodent Virus, Envelope Glycoproteins, TAF1, Viral Envelope Glycoprotein gp55 (Friend Virus), GDP Exchange Factors"],"pubmed_title_synonyms":["Uukuniemi Group Viruses, host organism, Sandfly Fever Sicilian Virus, Cell Communications, CG8487, Cell Interaction, Peptidomics, SFTS bunyavirus, Cell to Cell Interaction, AW049900, Cell-to-Cell Interaction, ARF1GEF, Pges2, DmelCG8487, ang, Cell, Communication, Cell Interactions, Garz, mPGES-2, 1700083E03Rik, PGES2, Interaction, C79137, mKIAA0248, C9orf15, Phleboviruses., GBF1, Gbf1, Communications, GBF-1, Cell-to-Cell Interactions, AI035702, CG 8487, ArfGEF, 0610038H10Rik, RGD1307160, Cell-to-Cell, Severe Fever with Thrombocytopenia Syndrome Bunyavirus, Interactions, Mpges2"],"additional_accession":[]},"is_claimable":false,"name":"Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses","description":"Novel tick-borne phleboviruses in the Phenuiviridae family, which are highly pathogenic in humans and all closely related to Uukuniemi virus (UUKV), have recently emerged on different continents. How phleboviruses assemble, bud, and exit cells remains largely elusive. Here, we performed high-resolution, label-free mass spectrometry analysis of UUKV immuno-precipitated from cell lysates and identified 39 cellular partners interacting with the viral envelope glycoproteins. Hit validation by a subsequent RNA interference screen revealed Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (GBF1), a guanine nucleotide exchange factor resident in the Golgi, as a critical host factor required for the UUKV life cycle. An inhibitor of GBF1, Golgicide A, confirmed the role of the cellular factor in UUKV infection. We could pinpoint the GBF1 requirement to UUKV replication and particle assembly. When the  investigation was extended to viruses from various positive and negative RNA viral families, we found that not only phleboviruses rely on GBF1 for infection, but also Flavi-, Corona-, Rhabdo-, and Togaviridae. In contrast, silencing or blocking GBF1 did not abrogate infection by the human adenovirus serotype 5 and immunodeficiency retrovirus type 1, the replication of both occurs in the nucleus. Together our results indicate that UUKV relies on GBF1 for viral replication, assembly and egress. This study also highlights the proviral activity of GBF1 in the infection by a broad range of important zoonotic RNA viruses.","dates":{"publication":"2019-10-02","submission":"2019-08-28"},"accession":"PXD015194","cross_references":{"TAXONOMY":["NEWT:68239","NEWT:108018","NEWT:377960","NEWT:1131","NEWT:190486","NEWT:2042546","NEWT:148942","NEWT:295546","NEWT:258594","NEWT:1126","NEWT:1129","NEWT:89187","NEWT:309807","NEWT:89184","NEWT:309800","NEWT:1323429","NEWT:876138","NEWT:44271","NEWT:193516","NEWT:2315688","NEWT:592321","NEWT:1073882","NEWT:6819","NEWT:428386","NEWT:1117","NEWT:498257","NEWT:10036","NEWT:32264","NEWT:10034","NEWT:661410","NEWT:488003","NEWT:224326","NEWT:376619","NEWT:3765","NEWT:3767","NEWT:433727","NEWT:135622","NEWT:672127","NEWT:656061","NEWT:37965","NEWT:656064","NEWT:3760","NEWT:36630","NEWT:381198","NEWT:418106","NEWT:10029","NEWT:913645","NEWT:2492962","NEWT:641809","NEWT:44250","NEWT:317447","NEWT:5530","NEWT:868565","NEWT:135674","NEWT:1562698","NEWT:12637","NEWT:2164133","NEWT:2767846","NEWT:1343074","NEWT:314344","NEWT:108061","NEWT:224308","NEWT:49928","NEWT:160621","NEWT:110368","NEWT:1916073","NEWT:1310161","NEWT:1230383","NEWT:77133","NEWT:1310165","NEWT:114727","NEWT:5516","NEWT:498211","NEWT:347256","NEWT:5518","NEWT:398007","NEWT:1527468","NEWT:498217","NEWT:498216","NEWT:11320","NEWT:1310173","NEWT:37919","NEWT:161934","NEWT:156587","NEWT:1148","NEWT:5508","NEWT:419481","NEWT:5507","NEWT:1140","NCBITaxon:2157","NEWT:2066563","NEWT:1143","NEWT:1462472","NEWT:1336795","NEWT:644042","NEWT:709964","NEWT:3712","NEWT:3711","NEWT:3714","NEWT:65121","NEWT:3715","NEWT:2065263","NEWT:1549675","NEWT:177437","NEWT:9014","NEWT:10891","NEWT:34869","NEWT:226126","NEWT:1616117","NEWT:34865","NEWT:28174","NEWT:550537","NEWT:284812","NEWT:3701","NEWT:3702","NEWT:1245466","NEWT:3704","NEWT:1246791","NEWT:34875","NEWT:9005","NEWT:34871","NEWT:9006","NEWT:33548","NEWT:1883426","NEWT:657321","NEWT:10886","NEWT:3708","NEWT:536231","NEWT:219813","NEWT:215451","NEWT:460519","NEWT:272843","NEWT:272844","NEWT:1348799","NEWT:55784","NEWT:485","NEWT:2709072","NEWT:2499525","NEWT:142786","NEWT:2853422","NEWT:487","NEWT:1679718","NEWT:480","NEWT:67767","NEWT:46835","NEWT:216778","NEWT:376686","NEWT:237610","EFO:0001352","NEWT:219809","NEWT:219808","NEWT:119562","NEWT:1883446","NEWT:1233435","NEWT:118223","NEWT:141469","NEWT:272831","NEWT:987059","NEWT:491","NEWT:460523","NEWT:85694","NEWT:85692","NEWT:911045","NEWT:3750","NEWT:291146","NEWT:29466","NEWT:233271","NEWT:3745","NEWT:1715989","NCBITaxon:4751","NEWT:3747","NEWT:278161","NEWT:415978","NEWT:410289","NEWT:191701","NEWT:9054","NEWT:472","NEWT:29459","NEWT:1380096","NEWT:28128","NEWT:470","NEWT:41122","NEWT:1328300","NEWT:748693","NCBITaxon:50557","NEWT:3735","NEWT:29491","NEWT:911022","NEWT:446","NEWT:153481","NEWT:445","NEWT:2003758","NEWT:63366","NEWT:63367","NEWT:29488","NEWT:215402","NEWT:3726","NEWT:30455","NEWT:28141","NEWT:9030","NEWT:9031","NEWT:3728","NEWT:108931","NEWT:219799","NEWT:219798","NEWT:548","NEWT:150475","NEWT:256737","NEWT:51350","NEWT:8694","NEWT:8692","NEWT:542","NEWT:394503","NEWT:13076","NEWT:219785","NEWT:451515","NEWT:8673","NEWT:550","NEWT:10804","NEWT:554","NEWT:451516","NEWT:552","NEWT:1325291","NEWT:42410","NEWT:1225786","NEWT:771870","NEWT:8665","NEWT:51338","NEWT:9995","NEWT:28112","NEWT:49012","NEWT:28110","NEWT:10832","NEWT:311339","NEWT:507601","NEWT:520","NEWT:64657","NEWT:186441","NEWT:2585209","NEWT:643680","NEWT:214092","NEWT:40697","NEWT:13095","NEWT:162425","NEWT:242124","NEWT:9986","NEWT:8654","NEWT:8658","NEWT:1268063","NEWT:8657","NEWT:9983","NEWT:8655","NEWT:595495","NEWT:80833","NEWT:479096","NEWT:28108","NEWT:28104","NEWT:1114957","NEWT:568703","NEWT:568708","NEWT:52641","NEWT:353152","NEWT:353153","NEWT:227377","NEWT:1774284","NEWT:27689","NEWT:207769","NEWT:40674","NEWT:51329","NCBITaxon:1763","NEWT:443906","NEWT:13037","NEWT:519","NEWT:941638","NEWT:7394","NEWT:6063","NEWT:404330","NEWT:1328388","NEWT:13064","NEWT:300641","NEWT:39655","NEWT:38323","NEWT:206411","NEWT:80869","NEWT:214053","NEWT:80863","NEWT:665890","NEWT:52639","NEWT:52638","NEWT:8697","NEWT:861109","NEWT:8695","NEWT:1196866","NEWT:6039","NEWT:510516","NEWT:1045775","NEWT:1123869","NCBITaxon:1335626","NEWT:7370","NEWT:280406","NEWT:83906","NEWT:99488","NEWT:1134506","NEWT:255470","NEWT:762903","NEWT:27697","NEWT:86185","NEWT:9935","NEWT:266940","NEWT:287889","NEWT:1028307","NEWT:52603","NEWT:92867","NEWT:92866","NEWT:1344414","NEWT:202950","NEWT:741158","NEWT:1293091","NEWT:202956","NEWT:315750","NEWT:632957","NEWT:9925","NCBITaxon:9606","NEWT:1436183","NEWT:1479235","NEWT:4232","NEWT:9922","NEWT:416348","NEWT:105812","NEWT:11298","NEWT:4233","NEWT:4236","NEWT:398031","NEWT:196627","NEWT:523840","NEWT:1076878","NEWT:200308","NEWT:200302","NEWT:9913","NEWT:9915","NEWT:105841","NEWT:1170227","NEWT:2666255","NEWT:999810","NEWT:28995","NEWT:1392998","NEWT:1150621","NEWT:1085791","NEWT:745531","NEWT:226900","NEWT:231490","NEWT:590651","NEWT:449239","NEWT:244704","NEWT:9909","NEWT:9902","NEWT:430615","NEWT:563041","NEWT:36599","NEWT:41949","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