Prideapplication/xmlftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/modificationSpecificPeptides.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/parameters.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/Experimental_Design.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/proteinGroups.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/peptides.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/msms.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_4.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_2.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_13.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_8.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_11.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_7.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_3.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_5.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_14.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_12.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_9.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_10.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_1.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017976/20180807_Q1_AWH_ColID_654_ProjID_1327_RolfesBonn_sample_6.rawprimaryOK200franklin@uni-bonn.deBernardo FrankllinMass SpectrometryShotgun proteomicsNot availableInflammasomesInnate immunityPlateletsMegakariocyteshttp://www.ebi.ac.uk/pride/archive/projects/PXD017976Blood PlateletPlateletMegakaryocyteSuspensions of freshly isolated human platelets were adjusted to a concentration of 5x107 ml-1 in RPMI. Platelets were left untreated, or stimulated with 200 ng ml-1 LPS, 1 U ml-1 for 3 hours. Platelets were pelleted by centrifugation (3000 x g, 10 minutes) and the cell-free supernatants were harvested. Cell-free supernatants were added with 1x complete protease inhibitor cocktail prior to freezing at -80°C. Proteomics analysis was carried out at the CECAD/CMMC Proteomics Core Facility (University Cologne, Germany) on a Q Exactive Plus Orbitrap (Thermo Scientific) mass spectrometer that was coupled to an EASY-nLC (Thermo Scientific). Briefly, peptides were loaded in 0.1% formic acid in water onto an in-house packed analytical column (50 cm ó 75 µm I.D., filled with 2.7 µm Poroshell EC120 C18, Agilent) and were chromatographically separated at a constant flow rate of 250 nl/minute with the following gradient: 3-4% solvent B (0.1% formic acid in 80 % acetonitrile) within 1 minute, 4-27% solvent B within 119 minute, 27-50% solvent B within 19 minutes, 50-95% solvent B within 1 minutes, followed by washing and equilibration of the columns. The mass spectrometer was operated in data-dependent acquisition mode.PrideMS1 intensity based label-free quantification methodiodoacetamide derivatized residuemonohydroxylated residueAll mass spectrometric raw data were processed by the CECAD/CMMC Proteomics Core Facility using Maxquant (version 1.5.3.8) with default parameters. Briefly, MS2 spectra were analyzed against the Uniprot HUMAN. fasta (downloaded at: 16.6.2017) database, including a list of common contaminants. False discovery rates on protein and PSM level were estimated by the target-decoy approach to 1% FDR for both. The minimal peptide length was determined to be 7 amino acids and carbamidomethylation at cysteine residues was considered as a fixed modification. Oxidation and acetylation were included as variable modifications. For the analysis, the match-between runs option was enabled. Label-free quantification (LFQ) was activated using default settings.ProteomicsBernardo FranklinQ ExactiveInstitute of Innate Immunity Biomedical Center, 1OG011, University Hospitals, University of Bonn Venusberg-Campus 1, 53127 Bonn, GermanyPARTIALHomo Sapiens (human)franklin@uni-bonn.deNot availableInstitute of Innate Immunity,Germanysodium salt, Rps17, d230, ammonium formate, 13C-labeled, human being, cadmium salt, MeCN, nickel formate dihydrate, NCMe, determination, lead formate, Peptidomics, nucleocapsid, aluminum salt, cesium salt, zinc formate, RPS17, dTAFII250, lead salt, magnesium formate, IB, PPS1, EfW1, zinc salt, Solvent, formic acid, dmTAF[[II]]230, peptide, M(3)67, Polypeptides, M(3L)i, potassium salt, ammonium tetraformate, M(3)S33, peptido, M(3)i, dmTAF1, cobalt(II) formate dihydrate, Taf230, 14C-labeled, CH3-C#N, B1, Separated, TAF250, Taf200, Divorced, dTAF[[II]]250, Ly87, CANDF6, TFIID TAF250, peptides, cel, thallium (+1) salt, cell, M, Lps, OFC6, LPS, l(3)67BDo, rubidium salt, uniform, PPS, min, Minute, Taf1p, Divorces, copper, calcium formate, methanoic acid, l(3)dtOA4, Estimated, man, free, CD284, dTAF250, Melting, lithium salt, column, DmelCG3922, Suspension, data., D1, M(3)i[55], ML1, peptidos, cromium (+3) salt, D9, TAF, PIT, M(3)RpS17, ammonium (2:1) salt, Toll, sodium formate, ATP, PTHB1, nickel salt, constant, dTAF[[II]]230, TAF[[II]]250, PLATEST, nickel formate, 1-(14)C-labeled, 3H-labeled, cobalt (+2) salt, TAF200, M(3)67C, strontium formate, l(3)84Ab, VWS1, BG:DS00004.13, potassium formate, copper (+2) salt, TAFII-250, TAF250/230, strontium salt, acetonitrile, Thermo Scientific, Cell, Peptide, CMMC, dTAF230, polypeptide, TAFII250, sodium (4:1:1) salt, ML-1, magnesium salt, M(3)i(55), C18, p230, cupric formate, chemical analysis, TAF[[II]]250/230, core, TFIID, VWS, BcDNA:RE44119, University, aluminum formate, nickel (+2) salt, ACETONITRILE, TLR4, Hydrogen Oxide, cyanomethane, Rasl2-8, Taf[[II]]250, rpS17, ammonium salt, Separation, lithium formate, TAF[[II]]230, Separations, M(3)q, Rp S17, formate, cobaltous formate, cromium (+3), TAF[II]250, ethanenitrile, Ran|M1, CG17603, TAF[[II]], anon-EST:Posey48, human, chromic formate, CG3922, IL-17F, Ran/M1, DmelCG17603, Taf250, concentration, SR3-5, ATPIB, copper salt, ammonium (4:1) salt, calcium salt, M(3L)i[55], Peptid, assay, Polypeptide, methyl cyanide, lead (+2) salt, Platelets, TAF230, TAF1SH2-Bb, Bru, SH2 domain-containing protein 1B, human being, Cysteine Hydrochloride, Raw, determination, Peptidomics, False, Aminosaeure, nucleocapsid, unsegmented paraxial mesoderm, Aminocarbonsaeure, Irip, FBN, Amino acid, protein, alpha-amino acid, protein-containing complex, somitomeric mesoderm, NAALAdase, GCPII, peptide, NAALADase I, Polypeptides, protein polypeptide chains, FOLH, ClvPrd, peptido, polypeptide chain, ECTOL1, N-acetylated-alpha-linked acidic dipeptidase I, C530001K22Rik, mKIAA1299, Del(8)44H, 3.4.17.21, Half-Cystine, protein aggregate, WMS, Svc, SH2-B, somitogenic mesoderm, SH2B, F, amino acids, peptides, Membrane glutamate carboxypeptidase, MS2, L Cysteine, E430039A18Rik, Acetylations, mGCP, proteins, NAALAD1, Estimated, man, Folylpoly-gamma-glutamate carboxypeptidase, CD156, OCTD, peptidos, Half Cystine, GPHYSD2, SGS, data, PLATEST, Zinc Cysteinate, protein complex, unsegmented mesenchyme, T5E21.12, Aminokarbonsaeure, acetylation, free., alpha-amino acids, SH2-B PH domain-containing signaling mediator 1, Peptide, alpha-amino carboxylic acids, CMMC, GCP2, ACMICD, Glutamate carboxypeptidase II, polypeptide, Cell growth-inhibiting gene 27 protein, native protein, natural protein, PSM, Psm, Protein, chemical analysis, core, MFS1, segmental plate, presumptive somite mesoderm, Prostate-specific membrane antigen, Sh2bpsm1, tandem MS, WMS2, Data Base, T5E21_12, Amino Acid, Acid, Pteroylpoly-gamma-glutamate carboxypeptidase, PH and SH2 domain-containing signaling mediator, Col4a-1, Amino acids, MS/MS, FGCP, common, L-Cysteine, MASS, Amino, CD156a, human, Folate hydrolase 1, Pro-rich, SSKS, AI425885, PSMA, Peptid, Acids, Polypeptide, assay, variable, PlateletsTaf[[II]]250, Taf200, dTAF[[II]]230, TAF[[II]]250, d230, dTAF[[II]]250, TAF[[II]]230, human being, TFIID TAF250, PLATEST, cel, cell, TAF200, l(3)84Ab, MEG-01., dTAFII250, Taf1p, TAF[II]250, BG:DS00004.13, TAFII-250, CG17603, TAF250/230, Estimated, TAF[[II]], EfW1, man, free, Cell, human, dTAF230, dTAF250, dmTAF[[II]]230, TAFII250, DmelCG17603, Taf250, dmTAF1, SR3-5, Taf230, p230, proteomic analysis, TAF[[II]]250/230, TFIID, TAF, Platelets, TAF230, TAF250, TAF1Pyroptosome, Cell., PLATEST, Estimated, Inflammasome, Platelets, activation, PyroptosomesfalsePlatelets fuel the inflammasome activation of innate immune cellsProteomic analysis of cell-free supernatants (Secretome) from human platelets (n = 4, donors) and megakariocytes (MEG-01, n = 3 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