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Balliau"],"technology_type":["Mass Spectrometry","Shotgun proteomics"],"software":["Not available"],"submitter_keywords":["Abiotic stresses","Proteome","Leaf","Pea"],"full_dataset_link":["https://www.ebi.ac.uk/pride/archive/projects/PXD048279"],"tissue":["Leaf"],"sample_protocol":["Total proteins were extracted from 110 mg of ground leaf tissues. Protein samples were lyophilized, then solubilized in buffer containing 6 M urea, 2 M thiourea, 10 mM DTT, 30 mM Tris-HCl pH 8.8 and 0.1% zwitterionic acid labile surfactant. For each sample, 20 µg of proteins were alkyled then digested overnight at 37°C using trypsin. Trypsin-digested proteins were desalted and analyzed by LC-MS/ MS using an Eksigent nlc425 device coupled to a Q Exactive mass spectrometer (ThermoFisher Scientific), with a glass needle (non-coated capillary silica tips, 360/20-10, New Objective)."],"repository":["Pride"],"quantification_method":["Not available"],"modification":["","4-tetrahydrothiazine-3-carboxylic acid"],"data_protocol":["Proteins were identified using X!Tandem v.2015.04.01.1 (Craig and Beavis, 2004), by matching peptides against the P. sativum v.1a database (https:// urgi.versailles.inra.fr/jbrowse/gmod_jbrowse/; Kreplak et al., 2019). Identified proteins were filtered and grouped using the X!TandemPipeline software v.3.4.3 (Langella et al., 2017). Relative protein quantification was performed using the MassChroQ software v.2.2 (Valot et al., 2011)."],"omics_type":["Proteomics"],"labhead":["Titouan Bonnot"],"instrument_platform":[""],"labhead_affiliation":["Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France"],"submission_type":["PARTIAL"],"species":["Pisum Sativum (garden Pea)"],"submitter_mail":["thierry.balliau@inrae.fr"],"publication":["42159077 Bonnot T, Henriet C, Aimé D, Kreplak J, Térézol M, Rossin N, Balliau T, Blanchard C, Lamotte O, Ourry A, Zivy M, Vernoud V, Gallardo-Guerrero K. Combined sulfur deficiency and water deficit trigger synergistic redox adjustments through coordinated transcript-protein regulation in pea. J Exp Bot. 2026:erag219 10.1093/jxb/erag219"],"submitter_affiliation":["Plateforme d'Analyse Proteomique Paris Sud-Ouest Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190, Gif-sur-Yvette, France"],"submitter_country":["France"],"pubmed_abstract":["Sulfur availability affects crop yield, seed quality, and tolerance to environmental constraints. To understand how pea (Pisum sativum) leaves respond to sulfur deficiency alone or combined with moderate water deficit during the early reproductive phase, we employed a multi-omics approach. Sulfur deficiency reduced plant height, biomass, and leaf carbon, and increased the nitrogen-to-sulfur ratio. Under this condition, 38 genes were up-regulated at both transcript and protein levels, including genes involved in sulfur metabolism and antioxidant responses, suggesting coordinated molecular adjustments that may mitigate low leaf sulfur status. Moderate water deficit alone had limited effects, but markedly altered plant growth, gene regulation, and metal accumulation when combined with sulfur deficiency. Among synergistically up-regulated genes, 20 were linked to reactive oxygen species responses and activated early, while seven genes with sustained activation encoded glutathione S-transferases (GSTs). This was associated with higher GST activity and probably contributed to limiting H2O2 accumulation in double-stressed leaves. A third of differentially accumulated proteins were encoded by genes showing no transcriptional change under stress, including temperature-induced lipocalins with potential protective roles under combined stress. These findings enhance our understanding of multi-level molecular responses to stress interactions, which is essential for improving crop resilience under multi-stress conditions."],"pubmed_title":["Combined sulfur deficiency and water deficit trigger synergistic redox adjustments through coordinated transcript-protein regulation in pea."],"pubmed_authors":["Bonnot Titouan T, Henriet Charlotte C, Aimé Delphine D, Kreplak Jonathan J, Térézol Morgane M, Rossin Nadia N, Balliau Thierry T, Blanchard Cécile C, Lamotte Olivier O, Ourry Alain A, Zivy Michel M, Vernoud Vanessa V, Gallardo-Guerrero Karine K"],"additional_accession":[]},"is_claimable":false,"name":"Leaf proteome responses to water deficit and sulfur deficiency in pea (Pisum sativum)","description":"Combination of stresses often induce specific molecular responses in plants, which could not be predicted from the effects of the same stresses applied individually. Sulfur availability in soils affects both yield and seed quality in major crops, and the plant capacity to tolerate other environmental constraints. To dissect the molecular responses to sulfur deficiency, and how water deficit alters the effects, we employed a multi-omics approach in leaves of Pisum sativum, in which both yield and seed quality are compromised by these two stressors. Using transcriptomics, proteomics and gene co-expression network analyses, we identified a module of genes strongly driven by S availability. This includes known and putative new players of plant responses to S-deprived conditions. Conserved profiles between proteins and mRNAs were specifically observed within this module, suggesting transcriptional regulation. Under stress combination, plant growth was severely compromised, and molecular responses were amplified, notably at the transcriptome level, in a time-specific manner. Transcriptional regulators of the highlighted genes and pathways were predicted, which may represent interesting targets to develop crops tolerant to multi-stress conditions. The produced datasets also represent important resources for our knowledge of the plant molecular responses specifically induced under single or combined stresses in plants.","dates":{"publication":"2026-09-01","submission":"2024-01-05"},"accession":"PXD048279","cross_references":{"TAXONOMY":["NEWT:6945","NEWT:184922","NEWT:6703","NEWT:3555","NEWT:71647","NEWT:2","NEWT:157546","NEWT:474186","NEWT:35554","NEWT:38942","NEWT:307972","NEWT:32046","NEWT:1496","NEWT:544496","NEWT:2102","NEWT:2042546","NEWT:259447","NEWT:45351","NEWT:43179","NEWT:4513","NEWT:180454","NEWT:5722","NEWT:1247","NEWT:6938","NEWT:1129","NEWT:376741","NEWT:55153","NCBITaxon:10407","NEWT:1736309","NEWT:309800","NEWT:281395","NEWT:10360","NEWT:1211601","NEWT:876138","NEWT:47664","NEWT:557436","NEWT:317548","NEWT:3654","NEWT:237561","NEWT:5833","NEWT:6928","NEWT:10036","NEWT:36745","NEWT:498019","NEWT:1351","NEWT:1438992","NEWT:1352","NEWT:2649997","NEWT:272563","NEWT:79220","NEWT:224326","NEWT:1333499","NCBITaxon:79857","NEWT:1096976","NEWT:82688","NEWT:95648","NEWT:3885","NEWT:3888","NEWT:5821","NEWT:1589","NEWT:135622","NCBITaxon:4896","NEWT:6915","NEWT:3649","NEWT:101510","NEWT:28903","NEWT:3880","NEWT:272559","NEWT:28909","NEWT:515849","NEWT:3641","NEWT:383379","NEWT:466585","NEWT:10029","NEWT:913645","NEWT:1000589","NEWT:85963","NEWT:85962","NEWT:143361","NEWT:317447","NEWT:4688","NEWT:7955","NEWT:7959","NEWT:2261","NEWT:31156","NEWT:398580","NEWT:4442","NEWT:4565","NEWT:1264690","NEWT:515619","NEWT:31155","NEWT:192875","NEWT:34305","NEWT:59729","NEWT:2164133","NCBITaxon:183674","NEWT:224308","NEWT:167387","NEWT:84645","NEWT:44586","NEWT:626528","NEWT:3347","NEWT:139927","NEWT:4558","NEWT:209285","NEWT:5888","NEWT:211586","NEWT:747078","NEWT:1282","NEWT:1283","NEWT:931281","NEWT:4550","NEWT:1000561","NEWT:294381","NEWT:197","NEWT:1390363","NEWT:77133","NEWT:288705","NEWT:29176","NEWT:145481","NCBITaxon:79824","NEWT:4787","NCBITaxon:4563","NEWT:5755","NEWT:44689","NEWT:3218","NEWT:5759","NEWT:1736231","NEWT:556182","NEWT:1270","NEWT:374990","NEWT:1392","NEWT:498217","NEWT:156471","NEWT:2242","NEWT:4784","NEWT:11320","NEWT:360106","NEWT:156476","NEWT:286","NEWT:391619","NEWT:360104","NEWT:246196","NEWT:287","NEWT:246197","NEWT:10117","NEWT:10239","NEWT:10116","NEWT:1280","NEWT:1735272","NEWT:83334","NEWT:83332","NEWT:44685","NEWT:317513","NEWT:161934","NEWT:1148","NEWT:580240","NEWT:5508","NEWT:294128","NEWT:5507","NEWT:11676","NEWT:55571","NEWT:35500","NEWT:1140","NEWT:100226","NEWT:4530","NEWT:1143","NEWT:4896","NEWT:75058","NEWT:13616","NEWT:1390","NEWT:1094343","NEWT:1336795","NEWT:172","NEWT:644042","NEWT:296543","NEWT:316435","NEWT:42157","NEWT:1773","NEWT:1895","NEWT:1182590","NEWT:3712","NEWT:82380","NEWT:1034304","NEWT:105023","NEWT:866628","NEWT:935293","NEWT:64152","NEWT:4924","NEWT:749200","NEWT:375146","NEWT:9378","NEWT:990346","NEWT:145953","NEWT:257309","NEWT:100816","NEWT:263","NEWT:230741","NEWT:52283","NEWT:284812","NEWT:8175","NCBITaxon:1313","NEWT:43330","NEWT:980415","NEWT:1603293","NEWT:408169","NEWT:44544","NEWT:47946","NEWT:4911","NEWT:645463","NEWT:3702","NEWT:129249","NEWT:1077286","NEWT:243277","NEWT:990119","NEWT:2850","NEWT:408172","NEWT:227321","NEWT:408170","NEWT:493760","NEWT:106590","NEWT:260710","NEWT:257313","NEWT:3827","NEWT:400772","NEWT:3708","NEWT:128161","NEWT:332648","NEWT:930945","NEWT:106592","NEWT:536231","NEWT:46704","NEWT:1436733","NEWT:460519","NEWT:1187947","NEWT:572307","NEWT:1432138","NEWT:269796","NEWT:10312","NEWT:1424507","NCBITaxon:1773","NEWT:1194599","NEWT:272844","NEWT:54571","NEWT:9598","NEWT:8030","NEWT:9483","NEWT:1513458","NCBITaxon:40559","NEWT:1639","NEWT:188229","NEWT:3818","NEWT:480","NEWT:4909","NEWT:67767","NEWT:759272","NEWT:432359","NEWT:46835","NEWT:1182263","NEWT:109757","NEWT:943146","NEWT:2711","NEWT:300852","NEWT:1502","NEWT:376686","NEWT:95486","NEWT:9103","NEWT:508771","NEWT:1883446","NEWT:29159","NEWT:253","NEWT:10306","NCBITaxon:2759","NEWT:1233435","NEWT:93061","NEWT:8022","NEWT:145943","NCBITaxon:4932","NEWT:595536","NEWT:240906","NEWT:593117","NEWT:89920","NEWT:29158","NEWT:3635","NEWT:5811","NEWT:235443","NEWT:180923","NEWT:108458","NEWT:272623","NEWT:272624","NEWT:2719099","NEWT:411483","NEWT:884019","NEWT:198215","NEWT:411490","NEWT:983964","NEWT:118499","NEWT:169963","NEWT:32644","NEWT:527796","NEWT:225117","NEWT:746128","NEWT:499175","NEWT:109779","NEWT:43665","NEWT:1266464","NEWT:1715989","NEWT:476272","NEWT:3747","NEWT:195051","NEWT:367830","NEWT:1255228","NEWT:178616","NEWT:649908","NEWT:410289","NEWT:373153","NEWT:375451","NEWT:352472","NEWT:357","NEWT:1071661","NEWT:360094","NEWT:470","NEWT:41364","NEWT:1313","NEWT:411469","NEWT:84023","NEWT:559292","NEWT:39491","NCBITaxon:5811","NEWT:29491","NEWT:411464","NEWT:411460","NEWT:2014887","NEWT:2762","NEWT:1174673","NEWT:1328426","NEWT:562","NEWT:411470","NEWT:33952","NEWT:2094720","NCBITaxon:2697049","NEWT:571256","NCBITaxon:138","NEWT:40483","NEWT:28038","NEWT:1663","NEWT:1423","NEWT:4932","NEWT:3603","NEWT:2759","NEWT:3847","NEWT:38293","NEWT:1428","NEWT:327159","NEWT:178876","NEWT:1660","NEWT:327160","NEWT:573","NEWT:9031","NEWT:1872122","NEWT:7091","NEWT:10893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CID":["0000-0002-8172-1605"]}}