Prideapplication/xmlftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/report_MS24-037_MAMs.pr_matrix.tsvftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/report_MS24-037_MAMs.pg_matrix.tsvftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/MS24037_Sample_to_Data_file_format.xlsxftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/checksum.txtftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07382_MS24-037_MAM-6_1_13.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07370_MS24-037_MAM-4_3_3.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07371_MS24-037_MAM-7_2_17.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07383_MS24-037_MAM-2_2_1.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07380_MS24-037_MAM-2_5_8.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07375_MS24-037_MAM-1_4_4.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07373_MS24-037_MAM-7_1_16.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07381_MS24-037_MAM-2_4_5.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07374_MS24-037_MAM-5_1_10.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07378_MS24-037_MAM-7_3_18.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07379_MS24-037_MAM-5_2_11.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07384_MS24-037_MAM-4_4_6.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07386_MS24-037_MAM-4_5_9.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07377_MS24-037_MAM-1_5_7.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07376_MS24-037_MAM-6_2_14.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07372_MS24-037_MAM-1_3_2.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07369_MS24-037_MAM-5_3_12.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/E07385_MS24-037_MAM-6_3_15.rawftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/SwissProt_Human_20230220.fastaftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/report_MS24-037_MAMs.parquetftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD073353/MS24-037_SL_.predicted.speclibprimaryOK200jean.armengaud@cea.frJean ARMENGAUDMass SpectrometryBottom-up proteomicsDifferentiated cellsShotgun proteomicsGlioblastomaDiahttps://www.ebi.ac.uk/pride/archive/projects/PXD073353MAM protein extracts were loaded on a SDS-PAGE for a short migration, excised from a single polyacrylamide band and in-gel digested by trypsin. The resulting peptides were desalted and analyzed via LC-MS/MS on an Exploris 480 tandem mass spectrometer.PrideNot availableRaw files were analyzed using DIA-NN 1.8.2 software in library free mode using SwissProt Human as databaseProteomicsJean ArmengaudPARTIALCEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, FranceHomo Sapiens (human)Not availablejean.armengaud@cea.frLi2DFrancefalseDIA analysis of Glioblastoma differentiated cells from different subtypesProteomic analysis of MAM-protein profiles in several GBM patient-derived cell subtypes, namely classical, proneural and mesenchymal.2026-04-142026-01-21PXD073353NEWT:6945NEWT:184922NEWT:6703NEWT:3555NEWT:2NEWT:157546NEWT:35554NEWT:38942NEWT:307972NEWT:32046NEWT:544496NEWT:2102NEWT:2042546NEWT:45351NEWT:43179NEWT:4513NEWT:5722NEWT:1247NEWT:55153NCBITaxon:10407NEWT:1736309NEWT:309800NEWT:281395NEWT:10360NEWT:1211601NEWT:876138NEWT:47664NEWT:3654NEWT:237561NEWT:5833NEWT:6928NEWT:10036NEWT:36745NEWT:498019NEWT:1351NEWT:1438992NEWT:1352NEWT:2649997NEWT:272563NEWT:224326NCBITaxon:79857NEWT:1096976NEWT:82688NEWT:95648NEWT:3885NEWT:3888NEWT:5821NEWT:1589NEWT:135622NCBITaxon:4896NEWT:6915NEWT:3649NEWT:101510NEWT:28903NEWT:3880NEWT:272559NEWT:28909NEWT:515849NEWT:3641NEWT:383379NEWT:466585NEWT:10029NEWT:913645NEWT:1000589NEWT:85963NEWT:85962NEWT:143361NEWT:317447NEWT:7955NEWT:7959NEWT:2261NEWT:31156NEWT:398580NEWT:4565NEWT:1264690NEWT:515619NEWT:192875NEWT:34305NEWT:59729NCBITaxon:183674NEWT:224308NEWT:84645NEWT:626528NEWT:3347NEWT:139927NEWT:4558NEWT:209285NEWT:5888NEWT:211586NEWT:747078NEWT:1283NEWT:931281NEWT:4550NEWT:1000561NEWT:294381NEWT:197NEWT:1390363NEWT:77133NEWT:288705NCBITaxon:79824NEWT:4787NCBITaxon:4563NEWT:5755NEWT:44689NEWT:3218NEWT:5759NEWT:1736231NEWT:1270NEWT:374990NEWT:498217NEWT:156471NEWT:2242NEWT:4784NEWT:11320NEWT:360106NEWT:156476NEWT:286NEWT:391619NEWT:360104NEWT:287NEWT:246197NEWT:10117NEWT:10239NEWT:10116NEWT:1280NEWT:1735272NEWT:83334NEWT:83332NEWT:44685NEWT:317513NEWT:1148NEWT:580240NEWT:5508NEWT:294128NEWT:11676NEWT:55571NEWT:35500NEWT:1140NEWT:100226NEWT:4530NEWT:1143NEWT:4896NEWT:75058NEWT:13616NEWT:1390NEWT:1094343NEWT:1336795NEWT:296543NEWT:316435NEWT:1773NEWT:1895NEWT:1182590NEWT:3712NEWT:82380NEWT:105023NEWT:866628NEWT:935293NEWT:64152NEWT:4924NEWT:749200NEWT:375146NEWT:990346NEWT:145953NEWT:257309NEWT:100816NEWT:263NEWT:230741NEWT:52283NEWT:284812NCBITaxon:1313NEWT:43330NEWT:1603293NEWT:408169NEWT:44544NEWT:47946NEWT:4911NEWT:645463NEWT:3702NEWT:129249NEWT:243277NEWT:990119NEWT:2850NEWT:408172NEWT:408170NEWT:493760NEWT:106590NEWT:260710NEWT:257313NEWT:400772NEWT:3708NEWT:128161NEWT:332648NEWT:106592NEWT:536231NEWT:1436733NEWT:460519NEWT:1187947NEWT:1432138NEWT:269796NEWT:10312NEWT:1424507NCBITaxon:1773NEWT:9598NEWT:8030NEWT:1639NEWT:188229NEWT:3818NEWT:480NEWT:4909NEWT:67767NEWT:432359NEWT:46835NEWT:1182263NEWT:109757NEWT:943146NEWT:2711NEWT:300852NEWT:1502NEWT:376686NEWT:95486NEWT:9103NEWT:1883446NEWT:29159NEWT:253NEWT:10306NCBITaxon:2759NEWT:1233435NEWT:93061NEWT:8022NEWT:145943NCBITaxon:4932NEWT:595536NEWT:240906NEWT:593117NEWT:89920NEWT:3635NEWT:5811NEWT:235443NEWT:180923NEWT:108458NEWT:272623NEWT:272624NEWT:411483NEWT:884019NEWT:198215NEWT:411490NEWT:983964NEWT:118499NEWT:169963NEWT:32644NEWT:527796NEWT:225117NEWT:499175NEWT:109779NEWT:476272NEWT:3747NEWT:195051NEWT:367830NEWT:1255228NEWT:178616NEWT:649908NEWT:410289NEWT:373153NEWT:375451NEWT:352472NEWT:357NEWT:1071661NEWT:360094NEWT:470NEWT:41364NEWT:1313NEWT:411469NEWT:84023NEWT:559292NEWT:39491NCBITaxon:5811NEWT:411464NEWT:411460NEWT:2014887NEWT:2762NEWT:1174673NEWT:1328426NEWT:562NEWT:411470NEWT:33952NEWT:2094720NCBITaxon:2697049NEWT:571256NEWT:28038NEWT:1663NEWT:1423NEWT:4932NEWT:3603NEWT:2759NEWT:3847NEWT:38293NEWT:327159NEWT:178876NEWT:1660NEWT:327160NEWT:573NEWT:9031NEWT:1872122NEWT:7091NEWT:108931NEWT:241368NEWT:42528NEWT:190802NEWT:9778NEWT:150475NEWT:303NEWT:9417NEWT:7111NEWT:347515NEWT:1216979NEWT:7237NEWT:5180NEWT:256737NEWT:9541NEWT:115104NEWT:1121114NEWT:663NEWT:1081927NEWT:1238993NEWT:67825NEWT:185579NEWT:941442NEWT:220668NEWT:13076NEWT:1821314NEWT:1249668NEWT:317NEWT:5286NEWT:7227NEWT:7469NEWT:885318NEWT:9402NEWT:9644NEWT:415540NEWT:550NEWT:675060NEWT:4081NEWT:334542NEWT:554NEWT:27592NEWT:98334NEWT:426428NEWT:63459NEWT:36185NEWT:588858NEWT:9639NCBITaxon:11071NEWT:242231NEWT:7574NEWT:1715256NEWT:7215NEWT:575412NEWT:929793NEWT:29204NEWT:28112NEWT:2172103NEWT:6494NEWT:7460NEWT:6491NEWT:507601NEWT:643680NCBITaxon:6157NEWT:42752NEWT:746360NEWT:6239NEWT:470150NEWT:162425NEWT:216257NEWT:102169NEWT:543734NEWT:9986NEWT:4054NEWT:73239NEWT:226186NEWT:1268063NEWT:8782NEWT:1263854NEWT:118503NEWT:435590NEWT:1902NEWT:160488NEWT:28104NEWT:1908NEWT:13164NEWT:216129NCBITaxon:2NEWT:985076NEWT:1215323NEWT:986NEWT:52641NEWT:7038NEWT:6192NEWT:28532NCBITaxon:38727NEWT:353152NEWT:2829NEWT:366581NEWT:216599NEWT:216595NEWT:1194669NEWT:243230NEWT:8355NEWT:633NEWT:9685NEWT:7029NEWT:1080772NEWT:8479NEWT:1283300NEWT:632NEWT:6183NEWT:6063NEWT:630NEWT:334747NEWT:61235NEWT:15368NEWT:6289NEWT:436486NEWT:6287NEWT:300641NEWT:727NEWT:9796NEWT:725NEWT:170187NEWT:469008NEWT:260707NEWT:256318NCBITaxon:6191NEWT:1836NEWT:185431NEWT:29760NEWT:260704NEWT:1719NEWT:703612NEWT:260705NEWT:80863NEWT:2697049NEWT:105231NEWT:52638NEWT:4097NCBITaxon:6073NEWT:884204NEWT:6279NEWT:1123869NEWT:9544NEWT:1329349NEWT:7370NEWT:83906NEWT:607699NCBITaxon:780NCBITaxon:1502NEWT:6282NEWT:208963NEWT:208964NEWT:1134506NEWT:575584NEWT:38783NEWT:8727NEWT:4006NEWT:8726NEWT:6426NEWT:6669NEWT:10090NEWT:89453NEWT:4120NEWT:51515NEWT:5693NEWT:2186NEWT:8724NEWT:51511NEWT:92867NEWT:8723NEWT:92866NEWT:5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