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Gigley"],"technology_type":["Mass Spectrometry","Bottom-up proteomics"],"software":[""],"submitter_keywords":["T. gondii","Toxoplasma","Human","Mrc5","Toxoplasma gondii","Iron","Theft"],"full_dataset_link":["https://www.ebi.ac.uk/pride/archive/projects/PXD084269"],"tissue":["Cell Culture","Fibroblast"],"sample_protocol":["Orbitrap Astral DIA – 40 minutes – CME. RH tachyzoites were grown in vitro in MRC5 fibroblasts as described above and once cultures lysed the host cell monolayer, the parasites were purified by filtration through 3 um pore filtration (Millipore). Tachyzoites were washed 3 times with sterile 1 X PBS and pelleted by centrifugation for 7 minutes at 2200 rpm and 4C.  Pellets were then frozen and sent to University of Arkansas for Medical Sciences (UAMS) IDeA National Resource for Quantitative Proteomics facility for analysis.  Total protein from each sample was reduced, alkylated, and purified by chloroform/methanol extraction prior to digestion with sequencing grade modified porcine trypsin (Promega). Tryptic peptides were then separated by a reverse phase Ion-Opticks-TS analytical column (25 cm x 75 um with 1.7 um C18 resin) supported by an EASY-Spray nano-source and stabilized with a Heater THOR Controller (Ion-Opticks) at 60°C. Peptides were trapped and eluted from a (PepMap Neo, 300um x 5mm Trap) using a Vanquish Neo UHPLC nano system (Thermo Scientific) which kept the samples at 11°C before injection. Peptides were eluted at a flow rate of 0.350uL/min using a 35 min gradient from 98% Buffer A (Buffer A = 0.1% formic acid, 0.5% acetonitrile in water) :2% Buffer B (Buffer B = 80% acetonitrile, 20% water, 0.1% formic acid) to 94.5:5.5 at 0.1 minutes to 56:44 at 27.1  minutes followed by a column wash of 45:55 at 29.7 minutes to 1:99 at 35 minutes followed by equilibration back to 98:2. Eluted peptides were ionized by electrospray (2.5 kV) followed by mass spectrometric analysis on an Orbitrap Astral mass spectrometer (Thermo). Precursor spectra were acquired from 380-980 Th, 240,000 resolution, normalized AGC target 200%, maximum injection time 3 ms. DIA acquisition on the Orbitrap Astral was configured to acquire 199, 3 Th window from 380-980 Th, 25% HCD Collision Energy, normalized AGC target 100%, maximum injection time 3 ms. Fragment (MS2) scan range from 150-2000 Th with an RF Lens (%) set to 40. Data Analysis: Spectronaut."],"repository":["Pride"],"quantification_method":["Not available"],"modification":[""],"data_protocol":["Following data acquisition, data were searched using Spectronaut (Biognosys version 20.1) against the UniProt Homo sapiens database (Proteome ID: UP000005640, Taxon ID: 9606, 2nd version of 2025) and Toxoplasma gondii database (Proteome ID: UP000001529, Taxon ID: 508771, 2nd version of 2025) using the directDIA method with an identification precursor and protein q-value cutoff of 1%, generate decoys set to true, the protein inference workflow set to maxLFQ, inference algorithm set to IDPicker, quantity level set to MS2, cross-run normalization set to false, and the protein grouping quantification set to median peptide and precursor quantity.  Fixed Modifications were set to Carbamidomethyl (C) and variable modifications were set to Acetyl (Protein N-term), Oxidation (M)."],"omics_type":["Proteomics"],"labhead":["Jason P. Gigley"],"instrument_platform":[""],"submission_type":["PARTIAL"],"labhead_affiliation":["Professor"],"species":["Homo Sapiens (human)","Toxoplasma Gondii","Toxoplasma Gondii Rh"],"publication":["39372795 Denton SL, Mejia A, Nevarez LL, Soares MP, Fox BA, Bzik DJ, Gigley JP. Theft of Host Transferrin Receptor-1 by &lt;i&gt;Toxoplasma gondii&lt;/i&gt; is required for infection. bioRxiv. 2023:2023.06.23.546322 10.1101/2023.06.23.546322"],"submitter_mail":["jgigley@uwyo.edu"],"submitter_affiliation":["Department of Molecular Biology, University of Wyoming"],"submitter_country":["United States"],"pubmed_abstract":["Nutrient acquisition by apicomplexan parasites is essential to drive their intracellular replication, yet the mechanisms that underpin essential nutrient acquisition are not defined. Using the apicomplexan model <i>Toxoplasma gondii</i> , we show that host cell proteins including the transferrin receptor 1, transferrin, ferritin heavy and light chains, and clathrin light chain are robustly taken up by tachyzoites. Tachyzoite acquisition of host cell protein was not related to host cell type or parasite virulence phenotypes. Bradyzoites possessed little capacity to acquire host cell proteins consistent with the cyst wall representing a barrier to host cell protein cargo. Increased trafficking of host cell transferrin receptor 1 and transferrin to endolysosomes boosted tachyzoite acquisition of host proteins and growth rate. Theft of host transferrin 1 and transferrin did not significantly affect iron levels in the tachyzoite. This study provides insight into essential functions associated with parasite theft of host iron sequestration and storage proteins."],"pubmed_title":["Theft of Host Transferrin Receptor-1 by &lt;i&gt;Toxoplasma gondii&lt;/i&gt; is required for infection."],"pubmed_authors":["Denton Stephen L SL, Mejia Alexa A, Nevarez Lindsay L LL, Soares Miguel P MP, Fox Barbara A BA, Bzik David J DJ, Gigley Jason P JP"],"additional_accession":[]},"is_claimable":false,"name":"Theft of Host Transferrin Receptor-1 by Toxoplasma gondii is Required for Infection: MS Proteome of Purified T. gondii Tachyzoites","description":"Host nutrient acquisition is essential for apicomplexan parasite infection, yet mechanisms underpinning this are not defined. We discovered the genome of Toxoplasma gondii lacks conserved genes for iron transport and storage and show these host cell proteins including the transferrin receptor 1, transferrin, ferritin heart/heavy and liver/light chains, and clathrin light chain are robustly taken up by tachyzoites. Acquisition of these host cell proteins was conserved across host cell species and parasite virulence type. Increased trafficking of host cell transferrin receptor 1 to endolysosomes boosted tachyzoite acquisition of host proteins and growth rate. Bradyzoites possessed little capacity to acquire host cell proteins consistent with the cyst wall representing a barrier to host cell protein cargo. The accompanying study to this dataset provides insight into essential functions associated with parasite theft of host iron acquisition and storage proteins. This dataset is proteomic analysis from purified T. gondii tachyzoites analyzed with both human and T. gondii databases to assess retention of human protein within T. gondii bodies.","dates":{"publication":"2026-10-01","submission":"2026-09-16"},"accession":"PXD084269","cross_references":{"TAXONOMY":["NEWT:330879","NEWT:377960","NEWT:1131","NEWT:35795","NEWT:2042546","NEWT:259447","NEWT:295546","NCBITaxon:2719036","NEWT:1334565","NEWT:625351","NEWT:258594","NCBITaxon:1280","NEWT:112503","NEWT:1129","NEWT:309807","NEWT:59753","NEWT:89184","NEWT:309800","NEWT:281395","NEWT:57577","NEWT:247480","NEWT:1211601","NEWT:876138","NEWT:44271","NEWT:193516","NEWT:2315688","NEWT:1073882","NEWT:6819","NEWT:112509","NEWT:475174","NEWT:111205","NEWT:1599","NEWT:428386","NEWT:1117","NEWT:498257","NEWT:10036","NEWT:32264","NEWT:12215","NEWT:1590","NEWT:10034","NEWT:33114","NEWT:1596","NEWT:661410","NEWT:638632","NEWT:224326","NEWT:376619","NCBITaxon:79857","NEWT:1096976","NEWT:3765","NEWT:3767","NEWT:1589","NEWT:135622","NEWT:4615","NEWT:67352","NEWT:672127","NEWT:35786","NEWT:1580","NEWT:399784","NEWT:96731","NEWT:656064","NEWT:1582","NEWT:3760","NEWT:1584","NEWT:36630","NEWT:1585","NEWT:383379","NEWT:381198","NEWT:418106","NCBITaxon:12721","NEWT:10029","NEWT:913645","NEWT:2492962","NEWT:641809","NEWT:1392488","NEWT:38815","NEWT:317447","NEWT:4688","NEWT:111225","NEWT:7719","NEWT:5530","NEWT:868565","NEWT:135674","NEWT:79329","NEWT:30069","NEWT:12637","NEWT:59729","NEWT:2164133","NEWT:295105","NEWT:29064","NEWT:108061","NEWT:60711","NEWT:224308","NEWT:273791","NEWT:3347","NEWT:49928","NEWT:3349","NEWT:160621","NEWT:212790","NEWT:110368","NEWT:55350","NEWT:1310161","NEWT:77133","NEWT:145481","NEWT:1310165","NEWT:29058","NCBITaxon:79824","NEWT:1912919","NEWT:410658","NEWT:5516","NEWT:44688","NEWT:44689","NEWT:370038","NEWT:498211","NEWT:345076","NEWT:347256","NEWT:5518","NEWT:398007","NEWT:1527468","NEWT:498217","NEWT:498216","NEWT:11320","NEWT:33554","NEWT:246196","NEWT:246197","NEWT:145458","NEWT:1310173","NEWT:200795","NEWT:37919","NEWT:2579791","NEWT:171719","NEWT:44685","NEWT:161934","NEWT:156587","NEWT:1148","NEWT:5508","NEWT:3329","NEWT:419481","NEWT:5507","NEWT:260499","NEWT:410661","NEWT:1140","NCBITaxon:2157","NEWT:2066563","NEWT:2649329","NEWT:1143","NEWT:1287689","NEWT:1094343","NEWT:1462472","NEWT:1336795","NEWT:644042","NEWT:150808","NEWT:1182590","NEWT:3712","NEWT:3711","NEWT:3714","NCBITaxon:37162","NEWT:270643","NEWT:3715","NEWT:2065263","NEWT:177437","NEWT:717966","NEWT:10891","NEWT:10418","NEWT:118698","NEWT:1616117","NEWT:118696","NEWT:34865","NEWT:52283","NEWT:28174","NEWT:284812","NEWT:8175","NEWT:43330","NEWT:980415","NEWT:1603293","NEWT:44664","NEWT:43346","NEWT:3702","NEWT:66440","NEWT:1245466","NEWT:3704","NEWT:244366","NEWT:1246791","NEWT:176597","NEWT:118694","NEWT:2850","NEWT:118691","NEWT:34871","NEWT:9006","NEWT:33548","NEWT:52299","NEWT:8165","NEWT:96794","NEWT:34878","NEWT:3708","NEWT:332648","NEWT:44670","NEWT:926571","NEWT:536231","NEWT:376219","NEWT:219813","NEWT:1510","NEWT:460519","NEWT:1515","NEWT:572307","NEWT:1432138","NEWT:1424507","NEWT:1194599","NEWT:272844","NEWT:1348799","NEWT:33995","NEWT:55784","NEWT:1303443","NEWT:9483","NEWT:485","NEWT:56636","NEWT:2709072","NEWT:2499525","NEWT:2853422","NEWT:487","NEWT:1538553","NEWT:1679718","NEWT:480","NEWT:67767","NEWT:45972","NEWT:46835","NEWT:109757","NEWT:582580","NEWT:1185650","NEWT:216778","NEWT:294607","NEWT:1502","NEWT:128017","NEWT:2836","NEWT:376686","NEWT:237610","NEWT:95486","EFO:0001352","NEWT:119562","NEWT:1883446","NEWT:1233435","NEWT:118223","NEWT:11757","NEWT:987059","NEWT:109760","NEWT:29031","NEWT:317047","NEWT:1509","NEWT:491","NEWT:460523","NEWT:45954","NEWT:235443","NEWT:1579","NEWT:133894","NEWT:1757312","NEWT:85694","NEWT:109786","NEWT:108458","NEWT:5936","NEWT:321967","NEWT:320637","NEWT:1078283","NEWT:3750","NEWT:983964","NEWT:11706","NEWT:32644","NEWT:527796","NEWT:499175","NEWT:109779","NEWT:3745","NEWT:1715989","NCBITaxon:4751","NEWT:3747","NEWT:1116234","NEWT:415978","NEWT:1255228","NEWT:410289","NEWT:191701","NEWT:373153","NEWT:1640278","NEWT:472","NEWT:940825","NEWT:29459","NEWT:529507","NEWT:1071661","NEWT:28128","NEWT:470","NEWT:41122","NEWT:5911","NEWT:748693","NCBITaxon:50557","NEWT:39251","NEWT:29491","NEWT:101841","NEWT:446","NEWT:153481","NEWT:2014887","NEWT:33952","NEWT:11723","NEWT:445","NEWT:153009","NEWT:261756","NEWT:166313","NEWT:63366","NEWT:63367","NEWT:29488","NEWT:215402","NEWT:1547","NEWT:1290454","NEWT:3726","NEWT:906914","NEWT:81231006","NEWT:28141","NEWT:9031","NEWT:27292","NEWT:1050722","NEWT:3728","NEWT:108931","NEWT:1293497","NEWT:1055524","NEWT:548","NEWT:150475","NEWT:267872","NEWT:381666","NEWT:172269","NEWT:9534","NEWT:2126348","NEWT:5180","NEWT:256737","NEWT:9541","NEWT:8694","NEWT:33936","NEWT:8692","NEWT:542","NEWT:2903","NEWT:185579","NEWT:872227","NEWT:13076","NEWT:2587410","NEWT:207340","NEWT:172271","NEWT:1006581","NEWT:8673","NEWT:33940","NEWT:2126337","NEWT:550","NEWT:10804","NEWT:33941","NEWT:554","NEWT:451516","NEWT:552","NEWT:1325291","NEWT:42410","NEWT:36185","NEWT:1054211","NEWT:1225786","NEWT:771870","NEWT:51338","NEWT:9995","NEWT:57541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